Hi DongInn, Just to say that I have reinstalled everything from scratch (Fedora on master node, oscar, imaging nodes) and I still have the error message when I log in nodes...
Mathieu DongInn Kim wrote: > Hi Mathieu, > > >> [EMAIL PROTECTED] ~]# ls -al .switcher.ini >> ls: cannot access .switcher.ini: No such file or directory >> >> Hum... I think this explains that... (/root/.switcher.ini is present on >> the master node) >> > Can you check to see if env-switcher is installed on the client nodes? > If so, I think env-switcher is not installed on your oscarimage either and > you may want to keep the oscarimage as stable as possible by installing it on > your oscarimage. > > Regards, > > - DongInn > > > Mathieu Dubois wrote: > >> DongInn Kim wrote: >> >>> Do you get the error when you re-log in on the head node too? >>> >>> >>>> switcher/1.0.13(91):ERROR:105: Unable to locate a modulefile for >>>> 'mpi/mpich-ch_p4-gcc-1.2.7' >>>> >>>> >> No, when I log into the master I don't see the message. >> >>> What is in /root/.switcher.ini on the client nodes? >>> >>> >> [EMAIL PROTECTED] ~]# ls -al .switcher.ini >> ls: cannot access .switcher.ini: No such file or directory >> >> Hum... I think this explains that... (/root/.switcher.ini is present on >> the master node) >> >>> Can we get the output of "rpm -qa | grep module" on the client node? >>> >>> >> [EMAIL PROTECTED] ~]# rpm -qa | grep module >> lam-switcher-modulefile-7.1.4-2.oscar >> openmpi-switcher-modulefile-1.2.4-1 >> torque-modulefile-2.1.10-1oscar >> module-init-tools-3.4-2.fc8 >> modules-oscar-3.2.5-2 >> mpich-ch_p4-gcc-oscar-module-1.2.7-9 >> lam-oscar-modulefile-7.1.4-1 >> modules-default-manpath-oscar-1.0.1-1 >> pvm-modules-oscar-3.4.5+6-2 >> >> One thing that I forgot to say: at step 2 of install_cluster (configure >> selected OSCAR package) I cannot configure switcher. I get the messages: >> on the console when entering step 2: >> --> About to run /var/lib/oscar/packages/switcher/pre_configure for switcher >> No pkg_config found >> on the gui when clicking on switcher: >> No pkg_config were supplied by any OSCAR packages -- nothing to configure >> on the console when leaving step 2: >> --> About to run /var/lib/oscar/packages/switcher/api-post-configure for >> switcher >> Checking if the OPKG has to be excluded... >> OPKG switcher: Analysing default values >> >> I also remember that some OSCAR base packages were not installed >> correctly (eg: oscar-base-scripts) so I have installed them manually. >> >> Maybe it is because I made a lot of start_over (and re-logged). The >> cluster is not in production. I can reinstall OSCAR if you think this is >> the best way. >> >> Thanks, >> Mathieu >> >>> Regards, >>> >>> - DongInn >>> >>> >>> Mathieu Dubois wrote: >>> >>> >>>> DongInn Kim wrote: >>>> >>>> >>>>> OK, they seem to be fine. >>>>> What about the client side? >>>>> >>>>> Can you just show me the contents of "ls -al >>>>> /opt/env-switcher/share/env-switcher/mpi/" on a client node? >>>>> >>>>> >>>>> >>>> [EMAIL PROTECTED] ~]# ssh bastet1 >>>> Last login: Tue Jun 10 17:44:01 2008 from bastet0.limsi.fr >>>> switcher/1.0.13(91):ERROR:105: Unable to locate a modulefile for >>>> 'mpi/mpich-ch_p4-gcc-1.2.7' >>>> [EMAIL PROTECTED] ~]# ls -al /opt/env-switcher/share/env-switcher/mpi/ >>>> total 20 >>>> drwxr-xr-x 2 root root 4096 2008-06-09 16:59 . >>>> drwxr-xr-x 3 root root 4096 2008-06-09 16:59 .. >>>> -rw-r--r-- 1 root root 2532 2008-06-09 16:59 lam-7.1.4 >>>> -rw-r--r-- 1 root root 592 2008-06-09 16:59 mpich-ch_p4-gcc-1.2.7 >>>> -rw-r--r-- 1 root root 2295 2008-06-09 16:59 openmpi-1.2.4 >>>> >>>> Seems fine too... cexec shows that files are present on each node. >>>> >>>> Mathieu >>>> >>>> >>>>> Regards, >>>>> >>>>> - DongInn >>>>> >>>>> >>>>> Mathieu Dubois wrote: >>>>> >>>>> >>>>> >>>>>> Hi DongInn, >>>>>> >>>>>> Here are the results: >>>>>> >>>>>> >>>>>> >>>>>> >>>>>>> # ls -al /opt/env-switcher/share/env-switcher/mpi/ >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> [EMAIL PROTECTED] lib]# ls -al /opt/env-switcher/share/env-switcher/mpi/ >>>>>> total 20 >>>>>> drwxr-xr-x 2 root root 4096 2008-06-09 16:45 . >>>>>> drwxr-xr-x 3 root root 4096 2008-06-09 16:45 .. >>>>>> -rw-r--r-- 1 root root 2532 2008-06-09 16:45 lam-7.1.4 >>>>>> -rw-r--r-- 1 root root 592 2008-06-09 16:45 mpich-ch_p4-gcc-1.2.7 >>>>>> -rw-r--r-- 1 root root 2295 2008-06-09 16:45 openmpi-1.2.4 >>>>>> >>>>>> >>>>>> >>>>>>> # module avail >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> [EMAIL PROTECTED] lib]# module avail >>>>>> >>>>>> ----------------------------------------------------------- >>>>>> /opt/env-switcher/share/env-switcher >>>>>> -----------------------------------------------------------mpi/lam-7.1.4 >>>>>> >>>>>> mpi/mpich-ch_p4-gcc-1.2.7 mpi/openmpi-1.2.4 >>>>>> >>>>>> -------------------------------------------------------------- >>>>>> /opt/modules/oscar-modulefiles >>>>>> --------------------------------------------------------------default-manpath/1.0.1(default) >>>>>> >>>>>> pvm/3.4.5+6(default) switcher/1.0.13(default) >>>>>> torque/2.1.10 >>>>>> >>>>>> ------------------------------------------------------------------- >>>>>> /opt/modules/version >>>>>> -------------------------------------------------------------------3.2.5 >>>>>> >>>>>> ---------------------------------------------------------- >>>>>> /opt/modules/Modules/3.2.5/modulefiles >>>>>> ----------------------------------------------------------dot >>>>>> module-cvs module-info modules null use.own >>>>>> >>>>>> ----------------------------------------------------------------- >>>>>> /opt/modules/modulefiles >>>>>> -----------------------------------------------------------------lam/lam-oscar-7.1.4 >>>>>> >>>>>> openmpi/openmpi-1.2.4 oscar-modules/1.0.5(default) >>>>>> >>>>>> >>>>>> >>>>>>> # rpm -qa | grep module >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> [EMAIL PROTECTED] lib]# rpm -qa | grep module >>>>>> pulseaudio-module-x11-0.9.7-0.17.svn20071017.fc8 >>>>>> lam-oscar-modulefile-7.1.4-1 >>>>>> openmpi-switcher-modulefile-1.2.4-1 >>>>>> modules-oscar-3.2.5-2 >>>>>> mpich-ch_p4-gcc-oscar-module-1.2.7-9 >>>>>> pvm-modules-oscar-3.4.5+6-2 >>>>>> pulseaudio-module-gconf-0.9.7-0.17.svn20071017.fc8 >>>>>> lam-switcher-modulefile-7.1.4-2.oscar >>>>>> module-init-tools-3.4-2.fc8 >>>>>> torque-modulefile-2.1.10-1oscar >>>>>> modules-default-manpath-oscar-1.0.1-1 >>>>>> >>>>>> >>>>>> >>>>>>> Regards, >>>>>>> >>>>>>> - DongInn >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> Thanks, >>>>>> Mathieu >>>>>> >>>>>> >>>>>> >>>>>>> Mathieu Dubois wrote: >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>>> Hi everybody, >>>>>>>> >>>>>>>> I have successfully installed OSCAR 5.1b2 on a x86_64 Fedora 8 cluster. >>>>>>>> >>>>>>>> I have set the system-wide default MPI to mpich (switcher mpi = >>>>>>>> mpich-ch_p4-gcc-1.2.7 --system on the master node as root) and >>>>>>>> re-logged on the master node. >>>>>>>> >>>>>>>> Each time I try to execute a cpush or cexec, I get the following >>>>>>>> message >>>>>>>> (repeated for each node): >>>>>>>> switcher/1.0.13(91):ERROR:105: Unable to locate a modulefile for >>>>>>>> 'mpi/mpich-ch_p4-gcc-1.2.7' >>>>>>>> >>>>>>>> The files for mpich, lam and openmpi are in >>>>>>>> /opt/env-switcher/share/env-switcher/mpi on each node. Maybe an >>>>>>>> environment variable is not set. >>>>>>>> >>>>>>>> So I don't know what's wrong and how to fix it. Can somebody help me? >>>>>>>> >>>>>>>> Thanks in advance, >>>>>>>> Any help would be appreciated (first cluster), >>>>>>>> Mathieu >>>>>>>> >>>>>>>> P.S.: In fact I try to compile NEURON >>>>>>>> (http://www.neuron.yale.edu/neuron/) from source on the cluster. Is >>>>>>>> there a tutorial on how to do this? >>>>>>>> >>>>>>>> ------------------------------------------------------------------------- >>>>>>>> Check out the new SourceForge.net Marketplace. >>>>>>>> It's the best place to buy or sell services for >>>>>>>> just about anything Open Source. >>>>>>>> http://sourceforge.net/services/buy/index.php >>>>>>>> _______________________________________________ >>>>>>>> Oscar-users mailing list >>>>>>>> Oscar-users@lists.sourceforge.net >>>>>>>> https://lists.sourceforge.net/lists/listinfo/oscar-users >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> ------------------------------------------------------------------------- >>>>>>> Check out the new SourceForge.net Marketplace. >>>>>>> It's the best place to buy or sell services for >>>>>>> just about anything Open Source. >>>>>>> http://sourceforge.net/services/buy/index.php >>>>>>> _______________________________________________ >>>>>>> Oscar-users mailing list >>>>>>> Oscar-users@lists.sourceforge.net >>>>>>> https://lists.sourceforge.net/lists/listinfo/oscar-users >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> ------------------------------------------------------------------------- >>>>>> Check out the new SourceForge.net Marketplace. >>>>>> It's the best place to buy or sell services for >>>>>> just about anything Open Source. >>>>>> http://sourceforge.net/services/buy/index.php >>>>>> _______________________________________________ >>>>>> Oscar-users mailing list >>>>>> Oscar-users@lists.sourceforge.net >>>>>> https://lists.sourceforge.net/lists/listinfo/oscar-users >>>>>> >>>>>> >>>>>> >>>>> ------------------------------------------------------------------------- >>>>> Check out the new SourceForge.net Marketplace. >>>>> It's the best place to buy or sell services for >>>>> just about anything Open Source. >>>>> http://sourceforge.net/services/buy/index.php >>>>> _______________________________________________ >>>>> Oscar-users mailing list >>>>> Oscar-users@lists.sourceforge.net >>>>> https://lists.sourceforge.net/lists/listinfo/oscar-users >>>>> >>>>> >>>>> >>>> ------------------------------------------------------------------------- >>>> Check out the new SourceForge.net Marketplace. >>>> It's the best place to buy or sell services for >>>> just about anything Open Source. >>>> http://sourceforge.net/services/buy/index.php >>>> _______________________________________________ >>>> Oscar-users mailing list >>>> Oscar-users@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/oscar-users >>>> >>>> >>> ------------------------------------------------------------------------- >>> Check out the new SourceForge.net Marketplace. >>> It's the best place to buy or sell services for >>> just about anything Open Source. >>> http://sourceforge.net/services/buy/index.php >>> _______________________________________________ >>> Oscar-users mailing list >>> Oscar-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/oscar-users >>> >>> >> ------------------------------------------------------------------------- >> Check out the new SourceForge.net Marketplace. >> It's the best place to buy or sell services for >> just about anything Open Source. >> http://sourceforge.net/services/buy/index.php >> _______________________________________________ >> Oscar-users mailing list >> Oscar-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/oscar-users >> > > ------------------------------------------------------------------------- > Check out the new SourceForge.net Marketplace. > It's the best place to buy or sell services for > just about anything Open Source. > http://sourceforge.net/services/buy/index.php > _______________________________________________ > Oscar-users mailing list > Oscar-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/oscar-users > ------------------------------------------------------------------------- Check out the new SourceForge.net Marketplace. 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