The command Michael asked was "mpirun," as there's no command called mpi. Can you try submitting a PBS job (via qsub) that runs the commands "echo $PATH" and "echo $LD_LIBRARY_PATH?" ex: #!/bin/sh #PBS -l nodes=1:ppn=1 #PBS -l walltime=00:05:00 echo $PATH echo $LD_LIBRARY_PATH It sounds like your PATH and/or LD_LIBRARY_PATH are somehow getting munged when you submit jobs. Also, with the results of this, can you show what $PATH and $LD_LIBRARY_PATH look like in your normal environment (just run the commands at the command line)? --Joe
________________________________ From: Kist [mailto:[EMAIL PROTECTED] Sent: Mon 12/1/2008 2:08 AM To: oscar-users@lists.sourceforge.net Subject: Re: [Oscar-users] Problem submitting jobs at Fedora 8 withOscar5.1b2 'which mpi' returns: /usr/bin/which: no mpi in ( ... al lot o directories ...) And if I run it with full path it returns library errors when trying to run my app. 2008/11/28 Michael Edwards <[EMAIL PROTECTED]> Then MPI is working because the tests use it from inside the scheduler. What does "which mpirun" return when you run it on a node? What happens if you run it on a node with the full path? On Fri, Nov 28, 2008 at 3:21 PM, Kist <[EMAIL PROTECTED]> wrote: > Completely. > > 2008/11/22 Michael Edwards <[EMAIL PROTECTED]> >> >> Do the tests in the install wizard run correctly? >> >> On Sat, Nov 22, 2008 at 5:33 PM, Kist <[EMAIL PROTECTED]> wrote: >> > Sorry about just answering this now. >> > I am having some problems submitting jobs using xpbs, because the >> > buttons on >> > the bottom of the xpbs window don't appear with my screen resolution. >> > I am trying to fix it, but I just could not find time to do this yet. >> > >> > Any other idea I can try? >> > >> > Thanks in advance. >> > >> > 2008/11/14 Ali Nazemian <[EMAIL PROTECTED]> >> >> >> >> Hi, >> >> Do u meet same result with using "xpbs" (GUI mode) ?! >> >> >> >> On Fri, Nov 14, 2008 at 8:23 PM, Kist <[EMAIL PROTECTED]> wrote: >> >>> >> >>> I has an Oscar 5.0 over SuSE 10.0 and another over Fedora (6 or 7, I >> >>> can't remember) but they crashed and I installed an Oscar 5.1b2 over >> >>> Fedora >> >>> 8. >> >>> >> >>> All succeeded well in the instalation and testing, but when I tryed to >> >>> submitt a job with qsub (the same way I was doing in the old cluster) >> >>> it >> >>> returned weird errors like: >> >>> "mpirun: Command not found". >> >>> >> >>> Also, when i run, for example, "mpirun -np 2 program" it succeeds, but >> >>> "echo $PBS_NODEFILE" retuns a blank line. >> >>> >> >>> My script works with qsub when I change 'mpiexec' for 'pbsdsh' in the >> >>> execution line, but I got some execution errors when I try to load >> >>> some >> >>> libraries. >> >>> >> >>> Can someone give me a light? >> >>> >> >>> Thanks! >> >>> >> >>> -- >> >>> Raul Kist >> >>> >> >>> >> >>> ------------------------------------------------------------------------- >> >>> This SF.Net email is sponsored by the Moblin Your Move Developer's >> >>> challenge >> >>> Build the coolest Linux based applications with Moblin SDK & win great >> >>> prizes >> >>> Grand prize is a trip for two to an Open Source event anywhere in the >> >>> world >> >>> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> >>> _______________________________________________ >> >>> Oscar-users mailing list >> >>> Oscar-users@lists.sourceforge.net >> >>> https://lists.sourceforge.net/lists/listinfo/oscar-users >> >>> >> >> >> >> >> >> >> >> -- >> >> A.Nazemian >> >> >> >> >> >> ------------------------------------------------------------------------- >> >> This SF.Net email is sponsored by the Moblin Your Move Developer's >> >> challenge >> >> Build the coolest Linux based applications with Moblin SDK & win great >> >> prizes >> >> Grand prize is a trip for two to an Open Source event anywhere in the >> >> world >> >> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> >> _______________________________________________ >> >> Oscar-users mailing list >> >> Oscar-users@lists.sourceforge.net >> >> https://lists.sourceforge.net/lists/listinfo/oscar-users >> > >> > >> > >> > ------------------------------------------------------------------------- >> > This SF.Net email is sponsored by the Moblin Your Move Developer's >> > challenge >> > Build the coolest Linux based applications with Moblin SDK & win great >> > prizes >> > Grand prize is a trip for two to an Open Source event anywhere in the >> > world >> > http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> > _______________________________________________ >> > Oscar-users mailing list >> > Oscar-users@lists.sourceforge.net >> > https://lists.sourceforge.net/lists/listinfo/oscar-users >> > >> > >> >> ------------------------------------------------------------------------- >> This SF.Net email is sponsored by the Moblin Your Move Developer's >> challenge >> Build the coolest Linux based applications with Moblin SDK & win great >> prizes >> Grand prize is a trip for two to an Open Source event anywhere in the >> world >> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> _______________________________________________ >> Oscar-users mailing list >> Oscar-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/oscar-users > > > > -- > Raul Kist > Microsoft Student Partner > Microsoft Innovation Center - Software Architect > Computer Engineering - UNICAMP - Brazil > [EMAIL PROTECTED] > http://raulkist.spaces.live.com/ > http://www.lms.ic.unicamp.br <http://www.lms.ic.unicamp.br/> > http://www.codeplex.com/LMSU > http://www.codeplex.com/NDOS > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > Oscar-users mailing list > Oscar-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/oscar-users > > ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Oscar-users mailing list Oscar-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/oscar-users -- Raul Kist Microsoft Student Partner Microsoft Innovation Center - Software Architect Computer Engineering - UNICAMP - Brazil [EMAIL PROTECTED] http://raulkist.spaces.live.com/ http://www.lms.ic.unicamp.br <http://www.lms.ic.unicamp.br/> http://www.codeplex.com/LMSU http://www.codeplex.com/NDOS
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