Re: [otb-users] Error during OTB SuperBuild compilation on Ubuntu 16.04

[Guillaume Pasero]

Hi, Instead of patching platform.h, can you try to patch the main CMakeLists.txt from GEOS : line 192: replace     check_prototype_exists(isnan cmath HAVE_STD_ISNAN) by     check_prototype_exists(std::isnan cmath HAVE_STD_ISNAN) This error comes more from a bad detection of system features than from a faulty header. Regards, Guillaume On 04/27/2018 01:25 PM, PENARD, Cédric wrote: Hello,   When I compile OTB in superbuild mode on Ubuntu 16.04 with gcc 5.4.0 I have an error on GEOS :   Scanning dependencies of target GEOS [ 35%] Creating directories for 'GEOS' [ 36%] Performing download step (download, verify and extract) for 'GEOS' -- GEOS download command succeeded.  See also /home/cpenard/OSO/iota2/scripts/install/OTB/build/GEOS/src/GEOS-stamp/GEOS-download-*.log [ 36%] No update step for 'GEOS' [ 36%] No patch step for 'GEOS' [ 36%] Performing GEOS_custom_patch step for 'GEOS' Input patch file: /home/cpenard/OSO/iota2/scripts/install/OTB/OTB/SuperBuild/patches/GEOS/geos-1-fixes-all.diff patching file cmake/modules/GenerateSourceGroups.cmake [ 37%] Performing configure step for 'GEOS' -- GEOS configure command succeeded.  See also /home/cpenard/OSO/iota2/scripts/install/OTB/build/GEOS/src/GEOS-stamp/GEOS-configure-*.log [ 37%] Performing build step for 'GEOS' CMake Error at /home/cpenard/OSO/iota2/scripts/install/OTB/build/GEOS/src/GEOS-stamp/GEOS-build-Release.cmake:16 (message):   Command failed: 2      'make'     See also       /home/cpenard/OSO/iota2/scripts/install/OTB/build/GEOS/src/GEOS-stamp/GEOS-build-*.log     CMakeFiles/GEOS.dir/build.make:114 : la recette pour la cible « GEOS/src/GEOS-stamp/GEOS-build » a échouée make[2]: *** [GEOS/src/GEOS-stamp/GEOS-build] Erreur 1 CMakeFiles/Makefile2:744 : la recette pour la cible « CMakeFiles/GEOS.dir/all » a échouée make[1]: *** [CMakeFiles/GEOS.dir/all] Erreur 2 Makefile:83 : la recette pour la cible « all » a échouée make: *** [all] Erreur 2   This error is fixed by change the line 142 in the file platform.h in GEOS archive : #  define ISNAN(x) isnan(x) By : #  define ISNAN(x) (std ::isnan)(x)   I used these command lines : git clone https://github.com/orfeotoolbox/OTB wget https://www.orfeo-toolbox.org/packages/SuperBuild-archives-6.4.tar.bz2 tar -xvjf SuperBuild-archives-6.4.tar.bz2 cd OTB mkdir build cd build cmake -DCMAKE_CXX_FLAGS:STRING=-std=c++14 -DUSE_SYSTEM_BOOST=ON -DBUILD_TESTING=OFF -DCMAKE_BUILD_TYPE=Release -DOTB_WRAP_PYTHON:BOOL=ON -DGDAL_SB_EXTRA_OPTIONS:STRING="--with-python" -DCMAKE_INSTALL_PREFIX=../install/ -DDOWNLOAD_LOCATION=../SuperBuild-archives/ -DOTB_USE_QWT=ON -DOTB_USE_GLEW=ON -DOTB_USE_GLUT=ON -DOTB_USE_OPENGL=ON ../OTB/SuperBuild/ make   Has anyone encountered this kind of error ?   Best Cédric     Cédric Penard, PhD Capgemini Practice CSD (Customer Software Development) / Toulouse Scientific computing / Oceanographic modeling   Tel.: +33 (0) 5 31 08 92 31 / www.capgemini.com 109, avenue Eisenhower 31036 Toulouse Cedex   People matter, results count.   This message contains information that may be privileged or confidential and is the property of the Capgemini Group. It is intended only for the person to whom it is addressed. If you are not the intended recipient, you are not authorized to read, print, retain, copy, disseminate, distribute, or use this message or any part thereof. If you receive this message in error, please notify the sender immediately and delete all copies of this message. -- -- Check the OTB FAQ at http://www.orfeo-toolbox.org/FAQ.html   You received this message because you are subscribed to the Google Groups "otb-users" group. To post to this group, send email to otb-users@googlegroups.com To unsubscribe from this group, send email to otb-users+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/otb-users?hl=en --- You received this message because you are subscribed to the Google Groups "otb-users" group. To unsubscribe from this group and stop receiving emails from it, send an email to otb-users+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout. -- Guillaume PASERO Responsable technique Business Unit ESPACE & GeoInformation - Département Payload Data & Applications CS Systèmes d'Information Parc de la Grande Plaine - 5, Rue Brindejonc des Moulinais - BP 15872 31506 Toulouse Cedex 05 - FRANCE +33 561 17 64 21 - guillaume.pas...@c-s.fr -- -- Check the OTB FAQ at http://www.orfeo-toolbox.org/FAQ.html   You received this message because you are subscribed to the Google Groups "otb-users" group. To post to this group, send email to otb-users@googlegroups.com To unsubscribe from this group, send email to otb-users+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/otb-users?hl=en --- You received this message because you are subscribed to the Google Groups "otb-users" group. To unsubscribe from this group and stop receiving emails from it, send an email to otb-users+unsubscr...@googlegroups.com. 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