-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2012-0115 2012-01-05 20:37:57 --------------------------------------------------------------------------------
Name : BEDTools Product : Fedora 15 Version : 2.15.0 Release : 1.fc15 URL : http://code.google.com/p/bedtools/ Summary : A flexible suite of utilities for comparing genomic features Description : The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together. -------------------------------------------------------------------------------- Update Information: Update to upstream release 2.15.0 with new command-line interface -------------------------------------------------------------------------------- ChangeLog: * Wed Jan 4 2012 Adam Huffman <[email protected]> - 2.15.0-1 - update to new upstream release 2.15.0 - new unified command line interface 'bedtools' - add python BR for new Makefile target to generate legacy commands - remove 'overlap' - add 'bedpeToBam', 'clusterBed', 'getOverlap', 'groupBy' - add 'multiIntersectBed', 'windowMaker' * Fri Oct 28 2011 Adam Huffman <[email protected]> - 2.13.4-1 - new upstream minor bugfix release, see http://code.google.com/p/bedtools/ * Thu Sep 8 2011 Adam Huffman <[email protected]> - 2.13.1-1 - new upstream minor release including fixes for tagBam * Tue Sep 6 2011 Adam Huffman <[email protected]> - 2.13.0-1 - new upstream release 2.13.0 - new tools tagBam and nucBed * Tue Apr 12 2011 Adam Huffman <[email protected]> - 2.12.0-1 - new upstream release 2.12.0 - new tools cuffToTrans and flankBed * Thu Feb 17 2011 Adam Huffman <[email protected]> - 2.11.2-1 - new upstream release - now README.rst - remove groupBy command, now in filo - new fjoin command -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update BEDTools' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys -------------------------------------------------------------------------------- _______________________________________________ package-announce mailing list [email protected] https://admin.fedoraproject.org/mailman/listinfo/package-announce
