-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2025-b17d6c22ae 2025-03-21 00:15:51.823112+00:00 --------------------------------------------------------------------------------
Name : python-probeinterface Product : Fedora 42 Version : 0.2.26 Release : 2.fc42 URL : https://github.com/SpikeInterface/probeinterface Summary : Handles probe layout, geometry, and wiring to device Description : A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments. Goals Make a lightweight package to handle: ⢠probe contact geometry (both 2D and 3D layouts) ⢠probe shape (contour of the probe, shape of channel contact, â¦) ⢠probe wiring to device (the physical layout often doesnât match the channel ordering) ⢠combining several probes into a device with global geometry + global wiring ⢠exporting probe geometry data into JSON files ⢠loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotechâ¦) Started here Bonus: ⢠optional plotting (based on matplotlib) ⢠load/save geometry using common formats (PRB, CSV, NWB, â¦) ⢠handle SI length units correctly um/mm/⦠Target users/project: ⢠spikeinterface team: integrate this into spikeextractor for channel location ⢠neo team: handle array_annotations for AnalogSignal ⢠spikeforest team: use this package for plotting probe activity ⢠phy team: integrate for probe display ⢠spyking-circus team: handle probe with this package ⢠kilosort team: handle probe with this package ⢠tridesclous team: handle probe with this package ⢠open ephys team: automatically generate channel map configuration files -------------------------------------------------------------------------------- Update Information: Update python-probeinterface to 0.2.26 and add a weak dependency on python3-jsonschema. probeinterface 0.2.26 Mar, 11th 2025 Features Support OneBox processor for Neuropixels-Open Ephys Wiring pathway for Cambridge A64 adaptor with 2x intan RHD2132 Add support for NP2020 (Neuropixels 2.0 - Quad Base) Bug fixes Fix NP contour from Open Ephys and remove oe_x_shift Tests Add test file and test for for NP2 - Quad Base Packaging Add json schema to core and make jsonschema dependency optional Rename - to _ in wiring_references -------------------------------------------------------------------------------- ChangeLog: * Wed Mar 12 2025 Benjamin A. Beasley <[email protected]> - 0.2.26-2 - Add a weak dependency on python3-jsonschema - Remove testing workaround for formerly-missing JSON schema file * Wed Mar 12 2025 Benjamin A. Beasley <[email protected]> - 0.2.26-1 - Update to 0.2.26 (close RHBZ#2351534) -------------------------------------------------------------------------------- References: [ 1 ] Bug #2351534 - python-probeinterface-0.2.26 is available https://bugzilla.redhat.com/show_bug.cgi?id=2351534 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2025-b17d6c22ae' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------
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