-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2025-5613b8bce9 2025-04-23 01:45:48.555161+00:00 --------------------------------------------------------------------------------
Name : R-ape Product : Fedora 42 Version : 5.7.1 Release : 11.fc42 URL : https://CRAN.R-project.org/package=ape Summary : Analyses of Phylogenetics and Evolution Description : Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R. -------------------------------------------------------------------------------- Update Information: Update to R 4.5.0 -------------------------------------------------------------------------------- ChangeLog: * Fri Apr 18 2025 Iñaki Ãcar <[email protected]> - 5.7.1-11 - R-maint-sig mass rebuild * Fri Apr 18 2025 Iñaki Ãcar <[email protected]> - 5.7.1-10 - R-maint-sig mass rebuild * Fri Apr 18 2025 Iñaki Ãcar <[email protected]> - 5.7.1-9 - R-maint-sig mass rebuild -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2025-5613b8bce9' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------
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