-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2025-4ee6f0a639 2025-10-01 00:14:58.043094+00:00 --------------------------------------------------------------------------------
Name : python-irodsclient Product : Fedora 43 Version : 3.2.0 Release : 2.fc43 URL : https://github.com/irods/python-irodsclient Summary : A python API for iRODS Description : iRODS (https://www.irods.org/) is an open source distributed data management system. This is a client API implemented in Python. -------------------------------------------------------------------------------- Update Information: Snakemake 9.11.4 (2025-09-19) Bug Fixes Confusion with Overriding input After Snakemake Modularization properly handle temp files in group jobs that are not needed outside of the group (do not upload them to storage and delete them early) Snakemake 9.11.3 (2025-09-16) Bug Fixes logging refinements use proper default and fallback LP solver in scheduler settings Documentation mention nodefaults for installation Snakemake 9.11.2 (2025-09-09) Bug Fixes properly fall back to greedy scheduler in case of pulp/cbc errors Snakemake 9.11.1 (2025-09-08) Bug Fixes invalid escape sequences in a doc string Performance Improvements for caching source files under potential race conditions, use rsync like file writing in order to improve performance on distributed filesystems like glusterfs Snakemake 9.11.0 (2025-09-05) Features add landing page to the report containing custom metadata defined with a YTE yaml template Issue a warning when unsupported characters are used in wildcard names Bug Fixes avoid checking output files in immediate-submit mode clarify --keep-going flag help text to distinguish runtime vs DAG construction errors enable docstring assignment in use rule ... with: block fix missing attribute error in greedy scheduler settings when using touch, dryrun or immediate submit only trigger script with CODE label parser.py incorrectly parsing multiline f-strings parsing ordinary yaml strings remove temp files when using checkpoints Restore python rules changes triggering reruns unit testing use queue_input_wait_time when updating queue input jobs Documentation output files within output directories is an error Snakemake 9.10.1 (2025-09-01) Performance Improvements optimize persistence implementation (only write metadata once, reduce file operations for improving glusterfs performance) Snakemake 9.10.0 (2025-08-19) Features migrate to scheduler plugin interface and scheduler plugins Bug Fixes don't rate limit jobs when touching raise an error when different rules produce identical (temp) output silence messages on module load snakemake-storage-plugin-s3 0.3.6 (2025-09-11) Bug Fixes properly calculate dir size snakemake-storage-plugin-s3 0.3.5 (2025-09-09) Bug Fixes norm the path part of a given query to not contain '..' (which is invalid for S3) snakemake-executor-plugin-slurm 1.8.0 (2025-09-18) Features adding image for mastodon posts Bug Fixes account lookup / test in multicluster environment quoting parameters snakemake-executor-plugin-slurm 1.7.0 (2025-09-09) Features new flag for SLURM qos snakemake-executor-plugin-kubernetes 0.5.1 (2025-09-10) Bug Fixes enable retrieving logs from terminated containers snakemake-interface-storage-plugins 4.2.3 (2025-09-10) Bug Fixes test size method PuLP 3.3.0 https://github.com/coin-or/pulp/compare/3.2.2...3.3.0 -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- References: [ 1 ] Bug #2391749 - snakemake-9.10.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2391749 [ 2 ] Bug #2392067 - Review Request: python-snakemake-interface-scheduler-plugins - Scheduler plugin interface for snakemake https://bugzilla.redhat.com/show_bug.cgi?id=2392067 [ 3 ] Bug #2392414 - snakemake-9.10.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2392414 [ 4 ] Bug #2393559 - snakemake-9.11.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2393559 [ 5 ] Bug #2394069 - python-snakemake-interface-scheduler-plugins-2.0.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2394069 [ 6 ] Bug #2394250 - python-snakemake-executor-plugin-slurm-1.7.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2394250 [ 7 ] Bug #2394251 - python-snakemake-storage-plugin-s3-0.3.5 is available https://bugzilla.redhat.com/show_bug.cgi?id=2394251 [ 8 ] Bug #2394368 - python-snakemake-executor-plugin-kubernetes-0.5.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2394368 [ 9 ] Bug #2394432 - python-snakemake-interface-storage-plugins-4.2.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=2394432 [ 10 ] Bug #2394544 - python-snakemake-storage-plugin-s3-0.3.6 is available https://bugzilla.redhat.com/show_bug.cgi?id=2394544 [ 11 ] Bug #2396341 - python-pulp-3.3.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2396341 [ 12 ] Bug #2396346 - snakemake-9.11.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=2396346 [ 13 ] Bug #2396347 - python-snakemake-executor-plugin-slurm-1.8.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2396347 [ 14 ] Bug #2396635 - snakemake-9.11.4 is available https://bugzilla.redhat.com/show_bug.cgi?id=2396635 [ 15 ] Bug #2396795 - python-irodsclient: Please rebuild in Fedora 43 https://bugzilla.redhat.com/show_bug.cgi?id=2396795 [ 16 ] Bug #2396844 - python-snakemake-storage-plugin-xrootd: Please rebuild in Fedora 43 https://bugzilla.redhat.com/show_bug.cgi?id=2396844 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2025-4ee6f0a639' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys -------------------------------------------------------------------------------- -- _______________________________________________ package-announce mailing list -- [email protected] To unsubscribe send an email to [email protected] Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/[email protected] Do not reply to spam, report it: https://pagure.io/fedora-infrastructure/new_issue
