https://bugzilla.redhat.com/show_bug.cgi?id=1120983
Bug ID: 1120983
Summary: Review Request: sambada - Landscape genomic analysis
software of large datasets
Product: Fedora
Version: rawhide
Component: Package Review
Severity: medium
Priority: medium
Assignee: [email protected]
Reporter: [email protected]
QA Contact: [email protected]
CC: [email protected]
Spec URL: http://us-la.cicku.me/sambada.spec
SRPM URL: http://us-la.cicku.me/sambada-0.4.2-1.fc22.src.rpm
Description: Samβada is an integrated software for landscape genomic analysis
of large datasets. The key features are the study of local adaptation in
relation-
ship with environment and the measure of spatial autocorrelation in en-
vironmental and molecular datasets. On one hand, Samβada uses logistic
regressions to estimate the probability that an individual carries a specific
genetic marker given the habitat that characterises its sampling site. One
the other hand, spatial autocorrelation is measured with Moran’s I and lo-
cal indicators of spatial association, in order to assess whether the observed
data in each location depends on the values in the neighbouring locations.
Underlying models are kept simple to put emphasis on process efficiency and
user-available options.
Fedora Account System Username: cicku
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