https://bugzilla.redhat.com/show_bug.cgi?id=1167467
Bug ID: 1167467
Summary: Review Request: bionetgen - Software for rule-based
modeling of biochemical systems
Product: Fedora
Version: rawhide
Component: Package Review
Severity: medium
Priority: medium
Assignee: [email protected]
Reporter: [email protected]
QA Contact: [email protected]
CC: [email protected]
Spec URL: http://in.waw.pl/~zbyszek/fedora/bionetgen.spec
SRPM URL: http://in.waw.pl/~zbyszek/fedora/bionetgen-2.2.5-1.fc22.src.rpm
Description:
BioNetGen is software for the specification and simulation of
rule-based models of biochemical systems, including signal
transduction, metabolic, and genetic regulatory networks. The
BioNetGen language has recently been extended to include explicit
representation of compartments. A review of methods for rule-based
modeling is available in Science Signaling (Sci. STKE, 18 July 2006,
Issue 344, p. re6).
BioNetGen is presently a mixture of Perl and C++. Network generation
is currently implemented in Perl, the network simulator is C++, and a
new language parser is being developed with ANTLR.
Fedora Account System Username: zbyszek
Some notes: the package makes all perl modules top-level, so they are not
really suitable for use from outside. A huge
__provides_exclude/__requires_exclude is necessary to work around this. I'll
try to work with upstream to fix that.
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