Please refer to the Github issue below. It is about remnant Vagrant box not 
updating, for details see below.

https://github.com/mitchellh/packer/issues/4182

On Friday, November 18, 2016 at 3:34:09 PM UTC+3, Gökhan Şengün wrote:
>
> No cleanup scripts here and build output shows nothing. Build output is 
> attached to the mail and the project is on github below.
>
> Thanks.
>
> On Friday, November 11, 2016 at 7:18:28 PM UTC+8, Pete Brown wrote:
>>
>> I had a similar issue a while ago and it turned out my cleanup script was 
>> uninstalling some of the packages I installed.
>> Check your build output to see what's going on.
>> On Thu., 10 Nov. 2016 at 20:12, Gökhan Şengün <[email protected]> 
>> wrote:
>>
>>> I am not adding the box Vagrant and directly using the .box file put by 
>>> Packer under builds folder. In every build I delete the file to make sure 
>>> it is recreated.
>>>
>>>
>>> On Thursday, November 10, 2016 at 2:42:06 AM UTC+3, Alvaro Miranda 
>>> Aguilera wrote:
>>>
>>>> whats the output of vagrant box list
>>>>
>>>> are you re-adding or deleting/adding the new box file ?
>>>>
>>>> Alvaro
>>>>
>>> On Thu, Nov 10, 2016 at 12:03 AM, Gökhan Şengün <[email protected]> 
>>>> wrote:
>>>>
>>> Hello everyone,
>>>>>
>>>>> Seems to be a bug but I just can not believe that my simple use case 
>>>>> fails for everyone, I must be doing something terribly wrong. Packer 
>>>>> version I am using is 0.11.0 and VirtualBox version is 5.1.8r111374.
>>>>>
>>>>> I would like to pack an image based on ubuntu 16.04.1 iso with 
>>>>> virtualbox-iso provider and provision a few packages (jq and subversion) 
>>>>> using shell provisioner (by calling apt). After Vagrant Box is produced, 
>>>>> I 
>>>>> use that box with Vagrant, sshing into the box shows that the installed 
>>>>> packages are not there!!
>>>>>
>>>>> I thought that this could be file system sync issue and added a few 
>>>>> sync commands around and then wait for 30 seconds with no luck.
>>>>>
>>>>> Please find the repo reproducing the issue below. I am also attaching 
>>>>> the packer log file, it shows no error and tells that the packages 
>>>>> installed OK.
>>>>>
>>>>> Clone the repo below and issue the commands in order to reproduce the 
>>>>> problem.
>>>>>
>>>>> Repo:
>>>>>
>>>>> https://github.com/gokhansengun/packer-shell-provision-issue
>>>>>
>>>>> Commands:
>>>>>
>>>>> $ PACKER_LOG=1 packer build ubuntu1604.json
>>>>> $ vagrant up virtualbox
>>>>> $ vagrant ssh virtualbox
>>>>> VM$ jq
>>>>> The program 'jq' is currently not installed. You can install it by 
>>>>> typing:
>>>>> sudo apt install jq
>>>>> VM$ svn
>>>>> The program 'svn' is currently not installed. You can install it by 
>>>>> typing:
>>>>> sudo apt install subversion
>>>>>
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>>>>>  
>>>>> <https://groups.google.com/d/msgid/packer-tool/228465e2-e9d2-4fec-b8db-984153fe7a9f%40googlegroups.com?utm_medium=email&utm_source=footer>
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>>>>>
>>>>
>>>>
>>>>
>>>> -- 
>>>> Alvaro
>>>>
>>>> -- 
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>>

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