>How do I convert this comma separated file into a DB if I have to?
You might want to take a look at our utility P-RAD PDB-Def. It
converts desktop ASCII data into PDB files using POSE. It requires
tab-delimited data, but it should be relatively easy to convert CSV
into tab-delimited. You can download the docs at http://www.p-rad.com.
Regards,
Steve Mann
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