On Thu, Dec 15, 2016 at 11:58 PM, Leonid Rozenberg <leon...@gmail.com> wrote: > * The version number: 20161123 > * The bugid: swap_activity_file-r > * The command line being run > parallel -j -8 --resume-failed --joblog prepare_bams_job.log --memfree 20G > --noswap --workdir `pwd` --env foo foo ::: $FILES ::: $ALLELES > where foo is a bash function that invokes and aligner script. > * The files being read (put the files on a webserver if they are big) > Sorry, the are on the order of several gigabytes.
Can you reproduce the error with smaller files? With --memfree 20G then --noswap makes very little sense. /Ole
