Thanks very much, Jerome. The vtkDICOMReader works right now. The problem was in my xml file for server manager. Again, thanks very much. I am really appreciate your help!
Aaron On Tue, Feb 10, 2009 at 7:49 AM, Jérôme <[email protected]> wrote: > Hi, > > I use 3 files for the vtkDICOMImageReader plugin : > > - One CMakeList.txt where you can find those lines: > > # READERS PLUGIN -------------------------------------------------- > > # Use the ADD_PARAVIEW_PLUGIN macro to build a plugin > ADD_PARAVIEW_PLUGIN( > DICOMImageReader #<--Name for the plugin > "1.0" #<--Version string > SERVER_MANAGER_XML DICOMReader.xml #<-- server manager xml > GUI_RESOURCE_FILES DICOMReaderGUI.xml > ) > #------------------------------------------------------------------ > > You can also use this file for other ADD_PARAVIEW_PLUGIN command > > - One DICOMReaderGUI.xml > - One DICOMReader.xml > > Both latter are given. > > Regarding the GDCMReader, I am sorry I could not help you. As I said, > I had never tried this lib in a Paraview framework. The best you can > do - well, the laziest in fact - is to ask the GDCM development team > to give a built-in paraview plugin. > > Today, the vtkDICOMImageReader is sufficient for me, and what I give > here makes it works in ParaView 3.4 stable and nightly CVS 3.5, both > Windows (XP and Vista) and Linux (Fedora 9). This is true when the > plugin is loaded on the computer that built Paraview. Other problems > arise when deploying on 'pure-of-devel-stuff' systems. > > I hope this will help. > > Best regards, > > Jerome > 2009/2/9 Biao She <[email protected]>: > > Thanks for your help, Jerome. > > I find the vtkGdcmReader files in the latest GDCM package. After I build > > these files as a Paraview Plug-in and load it, I got this error message > from > > Paraview console: > > ERROR: In > > > /usr/scratch/bshe/Paraview/ParaView-3.4.0/Servers/Common/vtkProcessModule.cxx, > > line 1079 > > vtkProcessModule (0x8a7c2e0): Cannot create object of type > "vtkGdcmReader". > > while processing > > Message 0 = New > > Argument 0 = string_value {vtkGdcmReader} > > Argument 1 = id_value {84} > > > > ERROR: In > > > /usr/scratch/bshe/Paraview/ParaView-3.4.0/Servers/Common/vtkProcessModule.cxx, > > line 1080 > > vtkProcessModule (0x8a7c2e0): Aborting execution for debugging purposes. > > I must do something wrong, but when I build the vtkGdcmReader, no error > > message at all. Here is my CMakeLists file: > > FIND_PACKAGE(ParaView REQUIRED) > > INCLUDE(${PARAVIEW_USE_FILE}) > > > > FIND_PACKAGE (GDCM) > > IF (GDCM_FOUND) > > INCLUDE(${GDCM_USE_FILE}) > > ENDIF (GDCM_FOUND) > > > > ADD_PARAVIEW_PLUGIN(vtkGDCMReader "1.0" SERVER_MANAGER_SOURCES > > vtkGdcmReader.cxx) > > ADD_PARAVIEW_PLUGIN(vtkGDCMReader "1.0" GUI_RESOURCE_FILES pqReader.xml) > > ADD_PARAVIEW_PLUGIN(vtkGDCMReader "1.0" SERVER_MANAGER_XML reader.xml) > > > > You also mentioned that you use vtkDICOMImageReader as your DICOM reader > in > > Paraview. It seems that I can only use the reader to read one DICOM image > > file. How can I write the XML files for vtkDICOMImageReader to read a > series > > of DICOM files? Could you please email me your XML files for > > vtkDICOMImageReader if possible? Thanks very much! > > > > Aaron > > > > > > On Fri, Feb 6, 2009 at 12:52 AM, Jérôme <[email protected]> wrote: > >> > >> Hi, > >> > >> if you intend to use a DICOM reader in Paraview, why not using > >> directly GDCM, instead of ITK? It contains a VTK Reader... If I am > >> right, you will just have to write the XML/CMake files that make the > >> reader available in Paraview. > >> > >> In my case, I use the vtkDICOMImageReader, that is a very simple dcm > >> file series reader: just give the folder containing the files, and let > >> it read. If you need more functionalities, the GDCM reader will do the > >> trick. > >> > >> You can find a later version of GDCM than the ITK integrated one, on > >> this website: http://www.creatis.insa-lyon.fr/Public/Gdcm/ . I cannot > >> help you more, as I had never use it for now. > >> > >> Cheers, > >> Jerome > >> > >> 2009/2/6 Biao She <[email protected]>: > >> > Hi everyone. > >> > I am wondering if anyone know how to integrate a ITK(GDCM) based DICOM > >> > reader to Paraview? > >> > My basic idea is: > >> > 1. Read DICOM series data through ITK(GDCM) > >> > 2. Export the data to a vtkImageImport class > >> > 3. Use the data in vtkImageImport as a source of Paraview > >> > I have done the first two steps. But I am not sure how to do the third > >> > one. > >> > > >> > I have read something about how to write a Paraview Reader in the > >> > Paraview > >> > book. It is said that all the readers must derive from vtkAlgorithm or > >> > one > >> > of its subclass. Fortunately, vtkImageImport is one of its subclass. > So, > >> > I > >> > guess it would be a good idea to choose vtkImageImport as a superclass > >> > of my > >> > reader. Am I right? > >> > If I choose vtkImageImport as a superclass, to make my reader works > >> > properly, which methods should be implemented in my reader? > >> > > >> > The last question is: How do I read the path to DICOM files from > >> > Paraview > >> > Client GUI and pass it to my reader? For example, the DICOM data is > >> > stored > >> > in /usr/DATA/ directory, how can I pass this value to my reader? > >> > > >> > Thanks very much for your help! > >> > > >> > Aaron > >> > > >> > _______________________________________________ > >> > ParaView mailing list > >> > [email protected] > >> > http://www.paraview.org/mailman/listinfo/paraview > >> > > >> > > > > > >
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