Hi Burlen, The data is fairly small at the moment. I tested your method on standalone binary Paraview on mac after loading the SciberQuest Toolkit, but it gives errors see below. Few questions 1) How does paraview know which reader to use with bov format 2) Is double precision float support? 3) Are the distributed binary standalone versions of paraview built with MPI enabled as your reader has this requirement.
-A Here is my bov header file test_0001.bov ###################################### #Specify data path test_0001.gda # The data size corresponds to NX,NY,NZ in the above example data. nx=393, ny=892, nz=23 # Specify name of the variable scalar: Density ###################################### ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 754 vtkPVCompositeDataPipeline (0x10ab90390): Algorithm vtkFileSeriesReader(0x10ab70490) returned failure for request: vtkInformation (0x10ab2cca0) Debug: Off Modified Time: 151588 Reference Count: 1 Registered Events: (none) Request: REQUEST_DATA_OBJECT ALGORITHM_AFTER_FORWARD: 1 FORWARD_DIRECTION: 0 ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/Utilities/VisItBridge/databases/AvtAlgorithms/vtkAvtSTMDFileFormatAlgorithm.cxx, line 122 vtkVisItBOVReader (0x10ab956b0): Unable to find any meshes ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 754 vtkPVCompositeDataPipeline (0x10ab7f120): Algorithm vtkVisItBOVReader(0x10ab956b0) returned failure for request: vtkInformation (0x10ad11f40) Debug: Off Modified Time: 151595 Reference Count: 1 Registered Events: (none) Request: REQUEST_DATA_OBJECT ALGORITHM_AFTER_FORWARD: 1 FORWARD_DIRECTION: 0 ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/Utilities/VisItBridge/databases/AvtAlgorithms/vtkAvtSTMDFileFormatAlgorithm.cxx, line 122 vtkVisItBOVReader (0x10ab956b0): Unable to find any meshes ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 754 vtkPVCompositeDataPipeline (0x10ab7f120): Algorithm vtkVisItBOVReader(0x10ab956b0) returned failure for request: vtkInformation (0x10ad11f40) Debug: Off Modified Time: 151595 Reference Count: 1 Registered Events: (none) Request: REQUEST_DATA_OBJECT ALGORITHM_AFTER_FORWARD: 1 FORWARD_DIRECTION: 0 ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/Utilities/VisItBridge/databases/AvtAlgorithms/vtkAvtSTMDFileFormatAlgorithm.cxx, line 122 vtkVisItBOVReader (0x10ab956b0): Unable to find any meshes ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 754 vtkPVCompositeDataPipeline (0x10ab90390): Algorithm vtkFileSeriesReader(0x10ab70490) returned failure for request: vtkInformation (0x10ab2cca0) Debug: Off Modified Time: 151588 Reference Count: 1 Registered Events: (none) Request: REQUEST_DATA_OBJECT ALGORITHM_AFTER_FORWARD: 1 FORWARD_DIRECTION: 0 ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/Utilities/VisItBridge/databases/AvtAlgorithms/vtkAvtSTMDFileFormatAlgorithm.cxx, line 122 vtkVisItBOVReader (0x10ab956b0): Unable to find any meshes ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 754 vtkPVCompositeDataPipeline (0x10ab7f120): Algorithm vtkVisItBOVReader(0x10ab956b0) returned failure for request: vtkInformation (0x10ad11f40) Debug: Off Modified Time: 151595 Reference Count: 1 Registered Events: (none) Request: REQUEST_DATA_OBJECT ALGORITHM_AFTER_FORWARD: 1 FORWARD_DIRECTION: 0 ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/Utilities/VisItBridge/databases/AvtAlgorithms/vtkAvtSTMDFileFormatAlgorithm.cxx, line 122 vtkVisItBOVReader (0x10ab956b0): Unable to find any meshes ERROR: In /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 754 vtkPVCompositeDataPipeline (0x10ab7f120): Algorithm vtkVisItBOVReader(0x10ab956b0) returned failure for request: vtkInformation (0x10ad11f40) Debug: Off Modified Time: 151595 Reference Count: 1 Registered Events: (none) Request: REQUEST_DATA_OBJECT ALGORITHM_AFTER_FORWARD: 1 FORWARD_DIRECTION: 0 On Dec 13, 2013, at 2:59 PM, Burlen Loring wrote: Hi Amit, Great! If you're data is stored as binary single precision float with one array per scalar/component, I'd recommend the BOV reader in the SciberQuest ToolKit plugin. It provides both a parallel read and writer for PV and supports scalars, vectors, symetric tensors and tensors. The ascii headers are very easy to write. http://www.hpcvis.com/vis/sq-bov-reader.html btw Some time ago I shared a parallel FORTRAN writer for this format with Mahidhar. It was quite while ago, but I may have a copy around if he doesn't. If you have some other data organization then XDMF may work. Burlen On 12/13/2013 12:21 PM, Chourasia, Amit wrote: Burlen, Yes the mesh is uniformly spaced. Instead of going in round about way of using BOV format and bunch of other transforms in paraview. What is the recommended way to doing things the paraview way for unigrid data 1) Is there a way to write a simple header like BOV for an existing dump of uniform 3d binary data? 2) Other format you recommend we can dump directly from the code, excluding ASCII VTK Thanks --Amit PS: Thanks your mail got buried in my mail-list folder, so did not see this earlier. On Dec 6, 2013, at 12:06 PM, Burlen Loring wrote: Hi Amit, Is your mesh uniformly spaced? If I'm not mistaken, PV does not currently support native volume rendering of stretched Cartesian meshes (ie vtkRectilinearGrid). However it does support volume rendering on uniform Carteisan meshes and other data types. There are quick and dirty ways to convert the stretched Cartesian meshes to a data type for which volume rendering is supported in the GUI. Obviously not ideal, but would let you render something quickly. The default BOV reader in PV is the VisIt BOV reader which always generates a stretched Cartesian meshes even when the data is uniformly spaced. This is a VisIt issue. If you have uniform spacing then you should use a different reader. On the other hand if you really do have a stretched Cartesian grid then the quickest path to a volume rendering is to convert to an unstructured grid. You can do this in the GUI after you open the data apply a threshold filter (set the threshold so that all data is passed, the defaults should do it). Burlen On 12/06/2013 08:14 AM, Benson Muite wrote: Hi Amit, XDMF data format is a little better than BOV in ParaView for rectilinear data. VisIt will also read XDMF. An example code can be found here: https://raw.github.com/openmichigan/PSNM/master/KleinGordon/Programs/KleinGordon3dMpiFFT/xdmfcreate.f90 The corresponding example program to create BOV header files is here: https://raw.github.com/openmichigan/PSNM/master/KleinGordon/Programs/KleinGordon3dMpiFFT/bovcreate.f90 These programs take as input the number of grid points in each dimension Regards, Benson On 06/12/2013 17:34, [email protected]<mailto:[email protected]> wrote: Send ParaView mailing list submissions to ---------------------------------------------------------------------- Message: 1 Date: Fri, 6 Dec 2013 02:22:55 +0000 From: "Chourasia, Amit" <[email protected]><mailto:[email protected]> Subject: [Paraview] Unable to do Volume rendering on BOV file To: "[email protected]"<mailto:[email protected]> <[email protected]><mailto:[email protected]> Message-ID: <[email protected]><mailto:[email protected]> Content-Type: text/plain; charset="us-ascii" Hello, I am loading a BOV file into Paraview, however I do not get an option for volume representation. Do I need to add something else to the bov header file other than standard BOV specifications? Alternatively is there a better way to load a rectilinear uniform grid data into paraview other than using BOV header files. Help appreciated. Cheers --Amit ------------------------------ Message: 2 Date: Thu, 5 Dec 2013 19:47:29 -0700 From: Utkarsh Ayachit <[email protected]><mailto:[email protected]> Subject: Re: [Paraview] Unable to do Volume rendering on BOV file To: "Chourasia, Amit" <[email protected]><mailto:[email protected]> Cc: "[email protected]"<mailto:[email protected]> <[email protected]><mailto:[email protected]> Message-ID: <cadhsjjdfw48kssxox+_fpjrgnwwqjeg4pizsg0qwc41pg3z...@mail.gmail.com><mailto:cadhsjjdfw48kssxox+_fpjrgnwwqjeg4pizsg0qwc41pg3z...@mail.gmail.com> Content-Type: text/plain; charset="iso-8859-1" Amit, Do you have sample dataset to share? Feel free to share it of the list if needed. Utkarsh On Thu, Dec 5, 2013 at 7:22 PM, Chourasia, Amit <[email protected]><mailto:[email protected]> wrote: Hello, I am loading a BOV file into Paraview, however I do not get an option for volume representation. Do I need to add something else to the bov header file other than standard BOV specifications? Alternatively is there a better way to load a rectilinear uniform grid data into paraview other than using BOV header files. Help appreciated. Cheers --Amit _______________________________________________ Powered by www.kitware.com<http://www.kitware.com/> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview _______________________________________________ Powered by www.kitware.com<http://www.kitware.com/> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
_______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
