Hey Victor,
Editing the make file is a bad idea. CCFLAG is the wrong flag. I think
this is much simpler than it appears.
just set the compiler flags on your configure line. as in:
./configure *CFLAGS="-O2 -g -fPIC" CXXFLAGS="-O2 -g -fPIC"* --with-sge
--with-mx=/opt/open-mx --with-pic --with-mx-libdir=/opt/open-mx/lib
--prefix=/opt/openmpi-1.8.1
before you do anything rm it all including build and install just to be
sure you don't have any stale objects libs etc.
Burlen
On 06/17/2014 09:47 PM, Victor wrote:
I still cannot compile Paraview. I attempted to recompile
openmpi-1.8.1 with fPIC but something is causing either the fPIC to be
set incorrectly or I am doing something wrong. In any case I am
completely stuck so I would really appreciate some help in traversing
this error:
Linking CXX shared library ../../../lib/libvtkParallelMPI-pv4.1.so
<http://libvtkParallelMPI-pv4.1.so>
/usr/bin/ld: /opt/openmpi-1.8.1/lib/libmpi.a(comm_init.o): relocation
R_X86_64_32 against `ompi_comm_f_to_c_table' can not be used when
making a shared object; recompile with -fPIC
/opt/openmpi-1.8.1/lib/libmpi.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [lib/libvtkParallelMPI-pv4.1.so.1] Error 1
make[1]: *** [VTK/Parallel/MPI/CMakeFiles/vtkParallelMPI.dir/all] Error 2
make: *** [all] Error 2
The latest openmpi configure command was: ./configure --with-sge
--with-mx=/opt/open-mx --with-pic --with-mx-libdir=/opt/open-mx/lib
--prefix=/opt/openmpi-1.8.1
I also attempted to manually set -fPIC flag by editing the Makefile
and by setting a global CCFLAG. Nothing worked.
On 31 May 2014 07:35, Victor <[email protected]
<mailto:[email protected]>> wrote:
Here it is, I hope. I never attempted to attach anything to a
mailing list post so I apologize if it doesn't actually attach.
On 30 May 2014 20:07, Utkarsh Ayachit <[email protected]
<mailto:[email protected]>> wrote:
Can you post your CMakeCache.txt file?
On Fri, May 30, 2014 at 2:40 AM, Victor
<[email protected] <mailto:[email protected]>> wrote:
> Thank you for the fast reply!
>
> I compiled an alternative openmpi-1.8.1 with -fPIC flag (I
verified that it
> was placed into the Makefile), removed the original Paraview
build
> directory, modified the Paraview build configuration by
rerunning ccmake to
> point to the alternative openmpi path, but the error remained.
>
> During Paraview compilation the alternative path for
openmpi-1.8.1 is used
> until it comes to the linking step where it attempts to link
to the system
> wide openmpi-1.8.1 location and of course fails.
>
> Linking CXX shared library
../../../lib/libvtkParallelMPI-pv4.1.so
<http://libvtkParallelMPI-pv4.1.so>
> /usr/bin/ld:
/opt/openmpi-1.8.1/lib/libmpi_cxx.a(intercepts.o): relocation
> R_X86_64_32S against `ompi_mpi_cxx_comm_throw_excptn_fctn'
can not be used
> when making a shared object; recompile with -fPIC
> /opt/openmpi-1.8.1/lib/libmpi_cxx.a: could not read symbols:
Bad value
> collect2: ld returned 1 exit status
> make[2]: *** [lib/libvtkParallelMPI-pv4.1.so.1] Error 1
> make[1]: ***
[VTK/Parallel/MPI/CMakeFiles/vtkParallelMPI.dir/all] Error 2
> make: *** [all] Error 2
>
>
> I cannot (will not) overwrite the system wide openmpi as I
have a parallel
> job running at the moment (CFD simulation) and this node is
acting as a head
> node serving openmpi from an NFS shared directory. I am
confident that the
> application will not need to call on openmpi now that it is
already running,
> but I'd rather not find out that I am wrong.
>
> Thus is there a way to force the Paraview installer to link
against an
> alternative build that was compiled with -fPIC?
>
> Thanks,
>
> Victor
>
>
> On 29 May 2014 18:37, Utkarsh Ayachit
<[email protected]
<mailto:[email protected]>> wrote:
>>
>> You'll have to recompile openmpi with -fPIC or link against
a shared
>> build of the same.
>>
>> On Thu, May 29, 2014 at 5:06 AM, Victor
<[email protected] <mailto:[email protected]>> wrote:
>> > I am trying to compile Paraview 4.1 with MPI support but
make exits at
>> > this
>> > point:
>> >
>> > /usr/bin/ld:
/opt/openmpi-1.8.1/lib/libmpi.a(comm_init.o): relocation
>> > R_X86_64_32 against `ompi_comm_f_to_c_table' can not be
used when making
>> > a
>> > shared object; recompile with -fPIC
>> > /opt/openmpi-1.8.1/lib/libmpi.a: could not read symbols:
Bad value
>> > collect2: ld returned 1 exit status
>> > make[2]: *** [lib/libvtkParallelMPI-pv4.1.so.1] Error 1
>> > make[1]: ***
[VTK/Parallel/MPI/CMakeFiles/vtkParallelMPI.dir/all] Error
>> > 2
>> > make: *** [all] Error 2
>> >
>> > How can I fix this error?
>> >
>> > Thanks,
>> >
>> > Victor
>> >
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>
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_______________________________________________
Powered by www.kitware.com
Visit other Kitware open-source projects at
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Please keep messages on-topic and check the ParaView Wiki at:
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Follow this link to subscribe/unsubscribe:
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