Hi, I think I know the cause, the PDB reader was modified to produce a vtkMolecule in addition to the vtkPolyData I think it has always produced. It looks like there is a packaging issue, and the XML file cannot be found. We should probably just statically compile the file in, or convert it to a header as the data is pretty static - atomic radii, colors, etc.
Marcus On Tue, Nov 25, 2014 at 9:06 AM, Berk Geveci <[email protected]> wrote: > Hey Rich, > > Can you send me the dataset? > > Best, > -berk > > On Mon, Nov 24, 2014 at 7:25 PM, Cook, Rich <[email protected]> wrote: > >> Hi, >> I have recently compiled paraview 4.2.0 on our clusters in the same way I >> compile with 4.1.0 and am getting some errors. >> I run pvserver in parallel, and it does not give any weird outputs. >> I connect with it from my desktop (Mac OS X). I can see in the desktop >> GUI that four remote servers are connected. >> I open up a PDB dataset and it is different. I see two “Output” objects >> in the pipeline browser. This is different than the behavior in 4.1.0. >> >> >> I click Apply and get smacked in the face with an error dialog. >> >> ERROR: In >> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry/vtkBlueObeliskDataParser.cxx, >> line 68 >> vtkBlueObeliskDataParser (0x7fea5e2a9980): Cannot find elements.xml. >> Checked >> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview-build/CMakeFiles/__macos_install/share/paraview-4.2/vtkDomainsChemistry >> and >> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Domains/Chemistry >> >> >> ERROR: In >> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/IO/XMLParser/vtkXMLParser.cxx, >> line 382 >> vtkBlueObeliskDataParser (0x7fea5e2a9980): Parse() called with no Stream >> set. >> >> >> ERROR: In >> /Users/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release-Python27/paraview/src/paraview/VTK/Common/ExecutionModel/vtkDemandDrivenPipeline.cxx, >> line 710 >> vtkPVDataRepresentationPipeline (0x7fea5e2a4d80): Input port 0 of >> algorithm vtkMoleculeRepresentation(0x7fea56c005d0) has 0 connections but >> is not optional. >> >> >> I’m unable to color by process scalar ID, or more precisely, the >> Filter seems to get applied but the color does not change. Appears all >> work is done on process 0. >> >> Something is vewwwy scwewwy. >> >> Help? >> >> >> -- >> ✐Richard Cook >> ✇ Lawrence Livermore National Laboratory >> Bldg-453 Rm-4024, Mail Stop L-557 >> 7000 East Avenue, Livermore, CA, 94550, USA >> ☎ (office) (925) 423-9605 >> ☎ (fax) (925) 423-6961 >> --- >> Information Management & Graphics Grp., Services & Development Div., >> Integrated Computing & Communications Dept. >> (opinions expressed herein are mine and not those of LLNL) >> >> >> >> >> _______________________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Please keep messages on-topic and check the ParaView Wiki at: >> http://paraview.org/Wiki/ParaView >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/paraview >> >> > > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Please keep messages on-topic and check the ParaView Wiki at: > http://paraview.org/Wiki/ParaView > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/paraview > >
_______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/paraview
