I wasn't very clear, was I? :-) I am trying to do a superbuild. I have enabled CMAKE_BUILD_TYPE:STRING=Debug and ENABLE_cgns:BOOL=ON (along with lots of other stuff). I blow away my previous build. I run cmake. I then try to compile the superbuild, and it dies as shown below.
Attaching the root CMakeCache.txt file from the superbuild. Alan -----Original Message----- From: Utkarsh Ayachit [mailto:[email protected]] Sent: Friday, March 13, 2015 6:51 PM To: Scott, W Alan Cc: [email protected] Subject: [EXTERNAL] Re: [Paraview] Superbuild, CGNS and debug I don't follow...what do you mean by "get a debugger into a CGNS build of ParaView"? You are getting these errors when building ParaView or running in in a debugger? On Fri, Mar 13, 2015 at 8:19 PM, Scott, W Alan <[email protected]> wrote: > I am trying to get a debugger into a CGNS build of ParaView. CGNS > builds seems to be dying trying to link to HDF5. Has anyone else seen > this? Any ideas how to compile debug with CGNS and the Superbuild? > > Here is some of the errors that I am seeing: > > checking whether build environment is sane... ../libcgns.so.3.1: > undefined reference to `H5T_NATIVE_INT32_g' > ../libcgns.so.3.1: undefined reference to `H5P_CLS_FILE_CREATE_g' > ../libcgns.so.3.1: undefined reference to `H5Pcreate' > ../libcgns.so.3.1: undefined reference to `H5Tcopy' > ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UINT32_g' > ../libcgns.so.3.1: undefined reference to `H5Sget_simple_extent_dims' > ../libcgns.so.3.1: undefined reference to `H5Eset_auto2' > ../libcgns.so.3.1: undefined reference to `H5Sget_simple_extent_ndims' > ../libcgns.so.3.1: undefined reference to `H5Aget_type' > ../libcgns.so.3.1: undefined reference to `H5Fcreate' > ../libcgns.so.3.1: undefined reference to `H5Sset_extent_simple' > ../libcgns.so.3.1: undefined reference to `H5Sclose' > ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_SCHAR_g' > ../libcgns.so.3.1: undefined reference to `H5Aopen_name' > ../libcgns.so.3.1: undefined reference to `H5Gunlink' > ../libcgns.so.3.1: undefined reference to `H5Lget_val' > ../libcgns.so.3.1: undefined reference to `H5Tget_native_type' > ../libcgns.so.3.1: undefined reference to `H5Acreate2' > ../libcgns.so.3.1: undefined reference to `H5Aclose' > ../libcgns.so.3.1: undefined reference to `H5Pset_deflate' > ../libcgns.so.3.1: undefined reference to `H5T_C_S1_g' > ../libcgns.so.3.1: undefined reference to `H5Tset_precision' > ../libcgns.so.3.1: undefined reference to `H5Dopen2' > ../libcgns.so.3.1: undefined reference to `H5Dget_type' > ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_FLOAT_g' > ../libcgns.so.3.1: undefined reference to `H5Lunpack_elink_val' > ../libcgns.so.3.1: undefined reference to `H5Dwrite' > ../libcgns.so.3.1: undefined reference to `H5Lcreate_external' > ../libcgns.so.3.1: undefined reference to `H5Dget_storage_size' > ../libcgns.so.3.1: undefined reference to `H5Screate_simple' > ../libcgns.so.3.1: undefined reference to `H5Aread' > ../libcgns.so.3.1: undefined reference to `H5check_version' > ../libcgns.so.3.1: undefined reference to `H5Iget_name' > ../libcgns.so.3.1: undefined reference to `H5Lis_registered' > ../libcgns.so.3.1: undefined reference to `H5Fget_obj_ids' > ../libcgns.so.3.1: undefined reference to `H5P_CLS_GROUP_CREATE_g' > ../libcgns.so.3.1: undefined reference to `H5Gcreate2' > ../libcgns.so.3.1: undefined reference to `H5Giterate' > ../libcgns.so.3.1: undefined reference to `H5Tget_size' > ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UCHAR_g' > ../libcgns.so.3.1: undefined reference to `H5Screate' > ../libcgns.so.3.1: undefined reference to `H5T_IEEE_F32BE_g' > ../libcgns.so.3.1: undefined reference to `H5Literate' > ../libcgns.so.3.1: undefined reference to `H5Gopen2' > ../libcgns.so.3.1: undefined reference to `H5Dset_extent' > ../libcgns.so.3.1: undefined reference to `H5T_IEEE_F64BE_g' > ../libcgns.so.3.1: undefined reference to `H5Dget_space' > ../libcgns.so.3.1: undefined reference to `H5Dclose' > ../libcgns.so.3.1: undefined reference to `H5P_CLS_FILE_ACCESS_g' > ../libcgns.so.3.1: undefined reference to `H5T_NATIVE_UINT64_g' > > Thanks, > > Alan > > > > > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Please keep messages on-topic and check the ParaView Wiki at: > http://paraview.org/Wiki/ParaView > > Search the list archives at: http://markmail.org/search/?q=ParaView > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/paraview >
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variable: CPACK_BINARY_IFW CPACK_BINARY_IFW-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_NSIS CPACK_BINARY_NSIS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_RPM CPACK_BINARY_RPM-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_STGZ CPACK_BINARY_STGZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_TBZ2 CPACK_BINARY_TBZ2-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_TGZ CPACK_BINARY_TGZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_TXZ CPACK_BINARY_TXZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_BINARY_TZ CPACK_BINARY_TZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_SOURCE_TBZ2 CPACK_SOURCE_TBZ2-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_SOURCE_TGZ CPACK_SOURCE_TGZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_SOURCE_TXZ CPACK_SOURCE_TXZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_SOURCE_TZ CPACK_SOURCE_TZ-ADVANCED:INTERNAL=1 //ADVANCED property for variable: CPACK_SOURCE_ZIP CPACK_SOURCE_ZIP-ADVANCED:INTERNAL=1 //STRINGS property for variable: CROSS_BUILD_STAGE CROSS_BUILD_STAGE-STRINGS:INTERNAL=HOST;TOOLS;CROSS //Request to build project boost ENABLE_boost:INTERNAL=OFF //Request to build project bzip2 ENABLE_bzip2:INTERNAL=OFF //Request to build project fontconfig ENABLE_fontconfig:INTERNAL=OFF //Request to build project freetype ENABLE_freetype:INTERNAL=OFF //Request to build project hdf5 ENABLE_hdf5:INTERNAL=OFF //Request to build project libxml2 ENABLE_libxml2:INTERNAL=OFF //Request to build project szip ENABLE_szip:INTERNAL=OFF //Request to build project zlib ENABLE_zlib:INTERNAL=OFF //Result of TRY_COMPILE HAVE_VOID_PTR_SIZE:INTERNAL=TRUE //ADVANCED property for variable: PARAVIEW_URL PARAVIEW_URL-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PARAVIEW_URL_MD5 PARAVIEW_URL_MD5-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PASS_LD_LIBRARY_PATH_FOR_BUILDS PASS_LD_LIBRARY_PATH_FOR_BUILDS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PV_EXTERNAL_PROJECTS PV_EXTERNAL_PROJECTS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PV_EXTRA_CMAKE_ARGS PV_EXTRA_CMAKE_ARGS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: PV_MAKE_NCPUS PV_MAKE_NCPUS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: REMOTE_PVWEB_TEST_BROWSER REMOTE_PVWEB_TEST_BROWSER-ADVANCED:INTERNAL=1 //ADVANCED property for variable: REMOTE_PVWEB_VISUALIZER_URLS REMOTE_PVWEB_VISUALIZER_URLS-ADVANCED:INTERNAL=1 //ADVANCED property for variable: TRUST_SVN_CERTIFICATES_AUTOMATICALLY TRUST_SVN_CERTIFICATES_AUTOMATICALLY-ADVANCED:INTERNAL=1 //ADVANCED property for variable: USE_NONFREE_COMPONENTS USE_NONFREE_COMPONENTS-ADVANCED:INTERNAL=1 //Use system lapack USE_SYSTEM_lapack:INTERNAL=OFF //Use system matplotlib USE_SYSTEM_matplotlib:INTERNAL=OFF //Use system mpi USE_SYSTEM_mpi:INTERNAL=OFF //Use system netcdf USE_SYSTEM_netcdf:INTERNAL=OFF //Use system osmesa USE_SYSTEM_osmesa:INTERNAL=OFF //CHECK_TYPE_SIZE: sizeof(void*) VOID_PTR_SIZE:INTERNAL=8 boost_ENABLED:INTERNAL=TRUE bzip2_ENABLED:INTERNAL=TRUE cgns_ENABLED:INTERNAL=TRUE //ADVANCED property for variable: download_location download_location-ADVANCED:INTERNAL=1 ffmpeg_ENABLED:INTERNAL=TRUE fontconfig_ENABLED:INTERNAL=TRUE freetype_ENABLED:INTERNAL=TRUE hdf5_ENABLED:INTERNAL=TRUE libxml2_ENABLED:INTERNAL=TRUE //Project just used to represent a logical block of dependencies nektarreader_IS_DUMMY_PROJECT:INTERNAL=TRUE numpy_ENABLED:INTERNAL=TRUE paraview_ENABLED:INTERNAL=TRUE //Project just used to represent a logical block of dependencies paraviewsdk_IS_DUMMY_PROJECT:INTERNAL=TRUE png_ENABLED:INTERNAL=TRUE pv_python_executable:INTERNAL=/projects/viz/paraview/ParaView/4.4.0-sb/Linux-eng-sci-rhel6-x86_64/Build/install/bin/python python_ENABLED:INTERNAL=TRUE qt_ENABLED:INTERNAL=TRUE //ADVANCED property for variable: qt_WORK_AROUND_BROKEN_ASSISTANT_BUILD qt_WORK_AROUND_BROKEN_ASSISTANT_BUILD-ADVANCED:INTERNAL=1 silo_ENABLED:INTERNAL=TRUE szip_ENABLED:INTERNAL=TRUE visitbridge_ENABLED:INTERNAL=TRUE //Project just used to represent a logical block of dependencies visitbridge_IS_DUMMY_PROJECT:INTERNAL=TRUE zlib_ENABLED:INTERNAL=TRUE
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