David, Thanks for your investigation. I will be able to try this tomorrow. The original issue was with Paraview 4.3.1. We recently built the latest master, so I will be able to confirm whether it was fixed in between. Best, Ryan
On Tue, Oct 27, 2015 at 10:23 AM, David Lonie <[email protected]> wrote: > Hi Ryan, > > I'm looking into this issue. > > I download the sample data you provided, and the state file loads and > renders fine for me with the current (as of this morning) master branch of > ParaView. What version of ParaView are you using? Can you test the latest > master branch? It appears that whatever the bug was, it has been fixed. > > Dave > > On Wed, Oct 21, 2015 at 9:50 AM, Aashish Chaudhary < > [email protected]> wrote: > >> Ryan, >> >> would it be possible for you to share a sample dataset? The NetCDF reader >> has fails to read data in certain corner cases but without having the data >> to reproduce the issue it is kind of little tricky to get to the problem. >> >> - Aashish >> >> On Wed, Oct 21, 2015 at 9:44 AM, Ryan Abernathey < >> [email protected]> wrote: >> >>> Does anyone have any feedback on this issue? >>> >>> I have no idea how to debug or continue. I will have to abandon paraview >>> for my project unless I can get some help somehow. >>> >>> Thanks, >>> >>> Ryan Abernathey >>> Assistant Professor >>> Columbia University, Department of Earth & Environmental Sciences >>> Lamont-Doherty Earth Observatory, Division of Ocean & Climate Physics >>> 205 C Oceanography >>> 61 Route 9W - PO Box 1000 >>> Palisades, NY 10964-8000 >>> http://rabernat.github.io >>> [email protected] >>> >>> >>> On Mon, Oct 19, 2015 at 4:59 PM, Ryan Abernathey < >>> [email protected]> wrote: >>> >>>> Hello, >>>> >>>> I am extremely frustrated and stuck on this problem. Any advice would >>>> be appreciated. >>>> >>>> I am working with a dataset of 2400 sequentially numbered netCDF files >>>> (generic & CF conventions). >>>> >>>> In a fresh pipeline, Paraview is able to recognizes these files as a >>>> single source and load them correctly. I then create a standard pipeline >>>> involving various filters (contour, etc., nothing funny) and save a state >>>> file. >>>> >>>> When I attempt to load the state file, I get the following segmentation >>>> fault. Further down you can see a ncdump of the offending file. >>>> >>>> Would appreciate any advice on how to debug / overcome this issue. Is >>>> it a bug? It sure feels like one... >>>> >>>> Best, >>>> Ryan Abernathey >>>> >>>> >>>> ERROR: In >>>> /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/IO/NetCDF/vtkNetCDFReader.cxx, >>>> line 822 >>>> vtkNetCDFCFReader (0x55c0620): netCDF Error: NetCDF: Index exceeds >>>> dimension bound >>>> >>>> >>>> ERROR: In >>>> /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, >>>> line 784 >>>> vtkPVCompositeDataPipeline (0x5be23d0): Algorithm >>>> vtkFileSeriesReader(0x4c0c3e0) returned failure for request: vtkInformation >>>> (0x8141700) >>>> Debug: Off >>>> Modified Time: 999905 >>>> Reference Count: 1 >>>> Registered Events: (none) >>>> Request: REQUEST_DATA >>>> FORWARD_DIRECTION: 0 >>>> FROM_OUTPUT_PORT: 0 >>>> ALGORITHM_AFTER_FORWARD: 1 >>>> >>>> >>>> >>>> >>>> ERROR: In >>>> /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, >>>> line 784 >>>> vtkCompositeDataPipeline (0x744fde0): Algorithm >>>> vtkPVGeometryFilter(0x7436500) returned failure for request: vtkInformation >>>> (0x5737250) >>>> Debug: Off >>>> Modified Time: 999943 >>>> Reference Count: 1 >>>> Registered Events: (none) >>>> Request: REQUEST_DATA_OBJECT >>>> FORWARD_DIRECTION: 0 >>>> FROM_OUTPUT_PORT: 0 >>>> ALGORITHM_AFTER_FORWARD: 1 >>>> >>>> >>>> >>>> >>>> Segmentation fault (core dumped) >>>> >>>> >>>> >>>> >>>> >>>> ------------------------ >>>> $ ncdump -h rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300.nc >>>> netcdf rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300 { >>>> dimensions: >>>> x = 512 ; >>>> y = 512 ; >>>> z = 64 ; >>>> time = UNLIMITED ; // (1 currently) >>>> variables: >>>> float x(x) ; >>>> x:units = "m" ; >>>> float y(y) ; >>>> y:units = "m" ; >>>> float z(z) ; >>>> z:units = "m" ; >>>> z:long_name = "height" ; >>>> float time(time) ; >>>> time:units = "d" ; >>>> time:long_name = "time" ; >>>> float p(z) ; >>>> p:units = "mb" ; >>>> p:long_name = "pressure" ; >>>> float zi(z) ; >>>> zi:units = "m" ; >>>> zi:long_name = "intfc_ht" ; >>>> float U(time, z, y, x) ; >>>> U:long_name = "X Wind >>>> Component " >>>> ; >>>> U:units = "m/s " ; >>>> float V(time, z, y, x) ; >>>> V:long_name = "Y Wind >>>> Component " >>>> ; >>>> V:units = "m/s " ; >>>> float W(time, z, y, x) ; >>>> W:long_name = "Z Wind >>>> Component " >>>> ; >>>> W:units = "m/s " ; >>>> float PP(time, z, y, x) ; >>>> PP:long_name = "Pressure >>>> Perturbation " ; >>>> PP:units = "Pa " ; >>>> float QRAD(time, z, y, x) ; >>>> QRAD:long_name = "Radiative heating >>>> rate " ; >>>> QRAD:units = "K/day " ; >>>> float TABS(time, z, y, x) ; >>>> TABS:long_name = "Absolute >>>> Temperature " ; >>>> TABS:units = "K " ; >>>> float QV(time, z, y, x) ; >>>> QV:long_name = "Water >>>> Vapor " >>>> ; >>>> QV:units = "g/kg " ; >>>> float QN(time, z, y, x) ; >>>> QN:long_name = "Non-precipitating Condensate >>>> (Water+Ice) " ; >>>> QN:units = "g/kg " ; >>>> float QP(time, z, y, x) ; >>>> QP:long_name = "Precipitating Water >>>> (Rain+Snow) " ; >>>> QP:units = "g/kg " ; >>>> float LQRAD(time, z, y, x) ; >>>> LQRAD:long_name = "LW Radiative heating >>>> rate " ; >>>> LQRAD:units = "K/day " ; >>>> float SQRAD(time, z, y, x) ; >>>> SQRAD:long_name = "SW Radiative heating >>>> rate " ; >>>> SQRAD:units = "K/day " ; >>>> } >>>> >>>> >>> >>> _______________________________________________ >>> Powered by www.kitware.com >>> >>> Visit other Kitware open-source projects at >>> http://www.kitware.com/opensource/opensource.html >>> >>> Please keep messages on-topic and check the ParaView Wiki at: >>> http://paraview.org/Wiki/ParaView >>> >>> Search the list archives at: http://markmail.org/search/?q=ParaView >>> >>> Follow this link to subscribe/unsubscribe: >>> http://public.kitware.com/mailman/listinfo/paraview >>> >>> >> >> >> -- >> >> >> >> *| Aashish Chaudhary | Technical Leader | Kitware Inc. >> * >> *| http://www.kitware.com/company/team/chaudhary.html >> <http://www.kitware.com/company/team/chaudhary.html>* >> >> _______________________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Please keep messages on-topic and check the ParaView Wiki at: >> http://paraview.org/Wiki/ParaView >> >> Search the list archives at: http://markmail.org/search/?q=ParaView >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/paraview >> >> >
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