Cory, I think that reader is a plugin. There is a plugin with NIFTI in the name anyway.
HTH, Shawn On Mon, Nov 14, 2016 at 5:11 PM, Cory Quammen <[email protected]> wrote: > Are you somehow opening these files in ParaView? I was not able to > either gzipped or not, which is what I expect because ParaView does > not have a Nifti reader to my knowledge. > > In Slicer, which can open these files, the volumes are reported to > occupy the same space with an origin at (102.536, 106.413, 30.149). > > Please provide more details, step-by-step, about how you are viewing > these files in ParaView. > > Thanks, > Cory > > On Mon, Nov 14, 2016 at 10:29 AM, padraig <[email protected]> > wrote: > > Attached are two volumes that have an overlap in paraview but the ITK > volume > > I find using the code below means there should be no overlap > > > > > > > > > > > > On 14/11/16 15:09, Cory Quammen wrote: > >> > >> MHA and NIFTII definitely contain position information that ParaView > >> should read. Do you have any small-ish representative volumes you can > >> share (privately with me if needed). > >> > >> On Mon, Nov 14, 2016 at 10:04 AM, padraig <[email protected]> > >> wrote: > >>> > >>> I have used MHA and NIFTII. I have converted the MHA into NIFTII using > >>> both > >>> c3d and ITK. > >>> > >>> > >>> > >>> On 14/11/16 14:59, Cory Quammen wrote: > >>>> > >>>> What file format are you using to load the volumes into ParaView? A > >>>> number of formats support volume positioning, so this should be > >>>> possible, unless you are loading a series of TIFF images, for example. > >>>> > >>>> Thanks, > >>>> Cory > >>>> > >>>> On Mon, Nov 14, 2016 at 5:32 AM, padraig <[email protected]> > >>>> wrote: > >>>>> > >>>>> Dear list, > >>>>> > >>>>> I have been having problems with the positioning of volumes using > >>>>> Paraview. > >>>>> ITK tells me that, using, > >>>>> > >>>>> IteratorType it2( img_input, > >>>>> img_input->GetLargestPossibleRegion() > >>>>> ); > >>>>> > >>>>> it2.GoToBegin(); > >>>>> ImageType::IndexType begin = it2.GetIndex(); > >>>>> img_input->TransformIndexToPhysicalPoint(it2.GetIndex(),p0); > >>>>> it2.GoToEnd(); > >>>>> --it2; > >>>>> img_input->TransformIndexToPhysicalPoint(it2.GetIndex(),p1); > >>>>> std::cout << p0 << p1 << std::endl; > >>>>> > >>>>> two volumes I have have the positions > >>>>> > >>>>> > >>>>> [-102.536, -106.413, 30.1491][102.512, 106.414, 177.564] > >>>>> > >>>>> and > >>>>> > >>>>> [-102.536, -106.413, 30.1491][102.512, 106.414, -117.265] > >>>>> > >>>>> When I load these into Paraview they occupy the same volume. In > >>>>> Slicer3D > >>>>> the > >>>>> volumes are distinct as I expect above. > >>>>> > >>>>> Thanks > >>>>> Pádraig > >>>>> _______________________________________________ > >>>>> Powered by www.kitware.com > >>>>> > >>>>> Visit other Kitware open-source projects at > >>>>> http://www.kitware.com/opensource/opensource.html > >>>>> > >>>>> Please keep messages on-topic and check the ParaView Wiki at: > >>>>> http://paraview.org/Wiki/ParaView > >>>>> > >>>>> Search the list archives at: http://markmail.org/search/?q=ParaView > >>>>> > >>>>> Follow this link to subscribe/unsubscribe: > >>>>> http://public.kitware.com/mailman/listinfo/paraview > >>>> > >>>> > >>>> > >> > >> > > > > > > -- > Cory Quammen > Staff R&D Engineer > Kitware, Inc. > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at http://www.kitware.com/ > opensource/opensource.html > > Please keep messages on-topic and check the ParaView Wiki at: > http://paraview.org/Wiki/ParaView > > Search the list archives at: http://markmail.org/search/?q=ParaView > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/paraview >
_______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Search the list archives at: http://markmail.org/search/?q=ParaView Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/paraview
