Hmm, can you check that you've set the vtkCPInputDataDescription grid through the SetGrid() method? You can add in something like "print("input is ", datadescription.GetInputDescriptionByName(<name>).GetGrid())" a couple of places in your Python script to see if there is actually a grid added there for that input.
Best, Andy On Tue, Aug 15, 2017 at 3:30 PM, <u.utku.turunco...@be.itu.edu.tr> wrote: > Without support of you and also Ben, i could not even reach to this point. > Thanks again. At least, code runs now. I think that this is big > improvement. > > Anyway, both command is working as expected, > > > mpirun -np 4 pvbatch <file> > > mpirun -np 4 pvbatch -sym <file> > > I also tested allinputsgridwriter_new.py with CFullExample (and also > Fortran90FullExample) and it works without any problem. As I mentioned > before, CFullExample was also working before upgrading protobuf (still, i > don't know why). So, it is not a good way to find the source of the > problem. > > --ufuk > > > > Hmm, how about making that Python code into a file and running it with > > both: > > mpirun -np 4 pvbatch <file> > > mpirun -np 4 pvbatch -sym <file> > > > > Just to verify, the allinputsgridwriter.py didn't work with any of the > > Catalyst examples (e.g. CFullExample), correct? > > > > I think this is going to be some issue where we continually bisect the > > problem space so I appreciate your patience on this. > > > > Best, > > Andy > > > > On Tue, Aug 15, 2017 at 2:49 PM, <u.utku.turunco...@be.itu.edu.tr> > wrote: > > > >> Hi, > >> > >> Yes. It works and produces same output. > >> > >> --ufuk > >> > >> > Hi Ufuk, > >> > > >> > It looks like the script line that is not working properly is: > >> > grid = > >> adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> > > >> > grid is set to None here for your build. Trying something simpler, in > >> > pvpython can you try the following and let us know if it works: > >> > ============= > >> > from paraview.simple import * > >> > a = Wavelet() > >> > a.UpdatePipeline() > >> > b = a.GetClientSideObject() > >> > c = b.GetOutputDataObject(0) > >> > print c > >> > ============= > >> > > >> > > >> > > >> > It should give output like the following if it works: > >> > vtkImageData (0x4586a00) > >> > Debug: Off > >> > Modified Time: 204809 > >> > Reference Count: 2 > >> > Registered Events: (none) > >> > Information: 0x4586450 > >> > Data Released: False > >> > Global Release Data: Off > >> > UpdateTime: 204810 > >> > Field Data: > >> > Debug: Off > >> > Modified Time: 204775 > >> > Reference Count: 1 > >> > Registered Events: (none) > >> > Number Of Arrays: 0 > >> > Number Of Components: 0 > >> > Number Of Tuples: 0 > >> > Number Of Points: 9261 > >> > Number Of Cells: 8000 > >> > Cell Data: > >> > Debug: Off > >> > Modified Time: 204783 > >> > Reference Count: 1 > >> > Registered Events: > >> > Registered Observers: > >> > vtkObserver (0x4586550) > >> > Event: 33 > >> > EventName: ModifiedEvent > >> > Command: 0x45864a0 > >> > Priority: 0 > >> > Tag: 1 > >> > Number Of Arrays: 0 > >> > Number Of Components: 0 > >> > Number Of Tuples: 0 > >> > Copy Tuple Flags: ( 1 1 1 1 1 0 1 1 ) > >> > Interpolate Flags: ( 1 1 1 1 1 0 0 1 ) > >> > Pass Through Flags: ( 1 1 1 1 1 1 1 1 ) > >> > Scalars: (none) > >> > Vectors: (none) > >> > Normals: (none) > >> > TCoords: (none) > >> > Tensors: (none) > >> > GlobalIds: (none) > >> > PedigreeIds: (none) > >> > EdgeFlag: (none) > >> > Point Data: > >> > Debug: Off > >> > Modified Time: 204809 > >> > Reference Count: 1 > >> > Registered Events: > >> > Registered Observers: > >> > vtkObserver (0x45864f0) > >> > Event: 33 > >> > EventName: ModifiedEvent > >> > Command: 0x45864a0 > >> > Priority: 0 > >> > Tag: 1 > >> > Number Of Arrays: 1 > >> > Array 0 name = RTData > >> > Number Of Components: 1 > >> > Number Of Tuples: 9261 > >> > Copy Tuple Flags: ( 1 1 1 1 1 0 1 1 ) > >> > Interpolate Flags: ( 1 1 1 1 1 0 0 1 ) > >> > Pass Through Flags: ( 1 1 1 1 1 1 1 1 ) > >> > Scalars: > >> > Debug: Off > >> > Modified Time: 204809 > >> > Reference Count: 2 > >> > Registered Events: (none) > >> > Name: RTData > >> > Data type: float > >> > Size: 9261 > >> > MaxId: 9260 > >> > NumberOfComponents: 1 > >> > Information: 0 > >> > Name: RTData > >> > Number Of Components: 1 > >> > Number Of Tuples: 9261 > >> > Size: 9261 > >> > MaxId: 9260 > >> > LookupTable: (none) > >> > Vectors: (none) > >> > Normals: (none) > >> > TCoords: (none) > >> > Tensors: (none) > >> > GlobalIds: (none) > >> > PedigreeIds: (none) > >> > EdgeFlag: (none) > >> > Bounds: > >> > Xmin,Xmax: (-10, 10) > >> > Ymin,Ymax: (-10, 10) > >> > Zmin,Zmax: (-10, 10) > >> > Compute Time: 204875 > >> > Spacing: (1, 1, 1) > >> > Origin: (0, 0, 0) > >> > Dimensions: (21, 21, 21) > >> > Increments: (0, 0, 0) > >> > Extent: (-10, 10, -10, 10, -10, 10) > >> > > >> > > >> > > >> > On Tue, Aug 15, 2017 at 2:27 PM, <u.utku.turunco...@be.itu.edu.tr> > >> wrote: > >> > > >> >> Hi Andy, > >> >> > >> >> Thanks for your help and the script. Actually, I was adding input > >> names > >> >> to > >> >> the script by hand. Anyway, I tested your script and it gives similar > >> >> error as follows, > >> >> > >> >> File > >> >> "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/ > >> >> egl/lib/site-packages/paraview/coprocessing.py", > >> >> line 305, in CreateProducer > >> >> if grid.IsA("vtkImageData") == True or \ > >> >> AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> File > >> >> "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/ > >> >> egl/lib/site-packages/paraview/coprocessing.py", > >> >> line 305, in CreateProducer > >> >> if grid.IsA("vtkImageData") == True or \ > >> >> AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> grid = adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> File > >> >> "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/ > >> >> egl/lib/site-packages/paraview/coprocessing.py", > >> >> line 305, in CreateProducer > >> >> if grid.IsA("vtkImageData") == True or \ > >> >> AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> > >> >> I'll tested whole environment once again with Intel compiler to see > >> it > >> >> helps or not. Let me know if you have any other idea. > >> >> > >> >> Regards, > >> >> > >> >> --ufuk > >> >> > >> >> > >> >> > Hi Ufuk, > >> >> > > >> >> > For the allinputsgridwriter.py you currently need to manually add > >> in > >> >> the > >> >> > inputs yourself (i.e. replace the "namedinputs = ['input']" line > >> with > >> >> the > >> >> > name of your inputs. That has caught me in the past as well so I > >> >> decided > >> >> > to > >> >> > fix that. Attached is my new version of that script where it > >> doesn't > >> >> > require you to specify the input names in case you want to try this > >> >> new > >> >> > one > >> >> > instead. If you do, please let us know if that solves your problem > >> or > >> >> not. > >> >> > > >> >> > Best, > >> >> > Andy > >> >> > > >> >> > > >> >> > On Tue, Aug 15, 2017 at 12:40 PM, Ben Boeckel > >> >> <ben.boec...@kitware.com> > >> >> > wrote: > >> >> > > >> >> >> On Tue, Aug 15, 2017 at 17:59:47 +0300, > >> >> u.utku.turunco...@be.itu.edu.tr > >> >> >> wrote: > >> >> >> > I solved the problem and i am able to run the simulation code > >> with > >> >> >> > Catalyst support by installing PV (5.4.0 rc4 and 5.3.0) with > >> newer > >> >> >> version > >> >> >> > of protobuf library (3.3.0) and compiling the model code with > >> this > >> >> >> version > >> >> >> > of PV (using gcc). > >> >> >> > > >> >> >> > Now, the problem is that the code gives following warnings and > >> do > >> >> >> nothing > >> >> >> > with standard allinputsgridwriter.py script. Do you think that > >> it > >> >> is > >> >> >> > related with protobuf library. The same setup is working without > >> >> any > >> >> >> > problem in an other system using Intel compiler. > >> >> >> > >> >> >> It'd be better to try with one MPI process rather > >> than…I count > >> >> 10 to > >> >> >> get > >> >> >> the error? Not sure what's up though, Andy? > >> >> >> > >> >> >> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl > >> >> >> /lib/site-packages/paraview/coprocessing.py", > >> >> >> > line 305, in CreateProducer > >> >> >> > grid = > >> >> adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> >> > grid = > >> >> adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > File > >> >> >> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl > >> >> >> /lib/site-packages/paraview/coprocessing.py", > >> >> >> > line 305, in CreateProducer > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > File > >> >> >> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl > >> >> >> /lib/site-packages/paraview/coprocessing.py", > >> >> >> > line 305, in CreateProducer > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > grid = > >> >> adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> >> > File > >> >> >> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl > >> >> >> /lib/site-packages/paraview/coprocessing.py", > >> >> >> > line 305, in CreateProducer > >> >> >> > grid = > >> >> adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > File > >> >> >> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl > >> >> >> /lib/site-packages/paraview/coprocessing.py", > >> >> >> > line 305, in CreateProducer > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > [PERFLOG] :: COPROC 2 0.01404021SEC. > >> >> >> > Running COP Component: 2005-08-27T00:12:00 --> > >> 2005-08-27T00:18:00 > >> >> >> Time > >> >> >> > Step: 2 [ 720.00] > >> >> >> > ATM-TO-COP: redist mask [CROSS] to mask [CROSS] > >> >> >> > ATM-TO-COP: redist topo [CROSS] to topo [CROSS] > >> >> >> > AttributeError: 'NoneType' object has no attribute 'IsA' > >> >> >> > grid = > >> >> adaptorinput.GetClientSideObject().GetOutputDataObject(0) > >> >> >> > File > >> >> >> > "/home/ext-dell-guest1/rds/hpc-work/progs/paraview-5.3.0/egl > >> >> >> /lib/site-packages/paraview/coprocessing.py", > >> >> >> > line 305, in CreateProducer > >> >> >> > if grid.IsA("vtkImageData") == True or \ > >> >> >> > >> >> >> --Ben > >> >> >> > >> >> > > >> >> > >> >> > >> > > >> > >> > >> > > > >
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