Hi,
I use pd (ext) since several years, and first of all, congratulation and thanks for this great project! Here are some bugs and problems I experienced. I run PD on Ubuntu Oneiric, and also tried it on another computer on Maverick...
These bugs are present in the download from april 11th.

   * the text around vu-meters is covered by them. (I run pd in french,
     maybe it has something to do: 'entrées' 'sorties' (in, out) ).
   * Settings save: I understand now why it isn't possible to save
     paths/libs anymore, but I also cannot save other settings, like
     edit modes, or verbose level...
   * On Maverick, déjà-vu sans mono is not found, but installed on the
     system...
   * There is a bug with [knob] Gui object: when editing preferences,
     and then apply or 'ok', nothing happens and pref windows is
     stuck... Have to close pd and reopen, then the changes are
     effective. Here is the log:

(Tcl) ERREUR NON GÉRÉE : expected integer but got "Sans"
    (processing "-font" option)
    invoked from within
".x9ae7ae0.c itemconfigure 9ae1a48LABEL -font {DejaVu Sans Mono 8 bold} -fill #000000 -text {} "
    ("uplevel" body line 1)
    invoked from within
"uplevel #0 $cmds_from_pd"(Tcl) ERREUR NON GÉRÉE : expected integer but got "Sans"
    (processing "-font" option)
    invoked from within
".x9ae7ae0.c itemconfigure 9ae1a48LABEL -font {DejaVu Sans Mono 8 bold} -fill #000000 -text {} "
    ("uplevel" body line 1)
    invoked from within
"uplevel #0 $cmds_from_pd"

   * Then, there is a big point, that have been already discussed many
     times: autoconnect sound/midi in jack should really be disabled,
     or made it possible to choose. Midi autoconnects with all clients,
     and we have to 'disconnect all' before patching as desired. Same
     with sound: sometimes, I use pd to make sound in a basic way, and
     just output on channels 1 - 2, but most of the time, I use it as a
     plugin, or inserted between several other jack-applications, with
     particular jack patches. The patchbay from qjackctl save my
     desired connection, and I should only start my apps and let the
     connections make themselves. The patch is the power of jack, and
     autoconnect goes against this philosophy. Also, maybe one day pd
     will be compatible with ladish/jack-session (the future of jack!).
   * Of course, I didn't tested everything, but most of my old patches
     seems to work on 0.43.1...

hope this will be helpful...
r
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