In case anyone is interested I have a directory full of photomicrography here:

http://www.science-info.org/pages/edfwill/

The videos in 'AVI' and the high resolution in 'AP' might be interesting. The AP images were taken at the limit of resolution for light microscopy with visible light. The lines on this diatom are spaced at about 220 nanometres. The dots (shown in some pictures) are only 180 nm apart. To achieve this level of performance extreme care and the very best illumination and optics are needed. Emphasis is on the care and I should add experience as well. The learning curve for this kind of work is as steep as it gets. I should add that a simple modified web camera was used for these pictures.

The videos were also made with this modified web camera and the resolution is perfectly adequate for high magnification. It is the lower mags for which a camera with loads of megapixels is needed. The *ist D is fine down to about about 40X total magnification, after this more pixels would be needed. There are tables on the Nikon site for this determination.

Don

Rob Studdert wrote:
On 17 Feb 2006 at 9:51, Don Williams wrote:

Hi Rob,

The stacking of images has been done for a long time in laboratories using electron and light microscopes. We did this in the late 70s on an HP2000 system in my Institute. I was able to entice a virologist from Holland (despite Apartheid) to visit for a few months. His work was mainly optical transforms. We then developed a suite of image processing programs using Tony Crowther's (MRC Cambridge) ideas as a start. But it took 8 hours or more to do a FFT, mask and reverse FFT on a 512 x 512 matrix. I can do it in a minute or two. And that time is taken making the mask. The actual processing is over before one's finger leaves the Enter Key.

Amazing, what scientists could have achieved years ago with all todays idle CPU cycles boggles the mind :-)

The colour fringes are not a problem unless one is concerned with aesthetics. I think it would be less work to fix the final image rather than the individual frames. I'll look into this. What do you use for the job? The collector, the condenser, the objective and the eyepiece all contribute to the problem and a combination of optics to eliminate them entirely would cost about £20 000 at a rough guess. As it is the objective I used for this lists at about £1200.

Panotools could be used to batch process a set of images prior to stacking and I would guess that once the correction parameters are determined they will apply to all images captured with the same objectives and mag:

http://photocreations.ca/radial_distortion/  (outline)
http://www.abolais.nl/ca-cor.htm (more detailed and most suitable method for your purposes)

There are less thorough options using GUI tools such as PTlens but the results would be near as good.

http://epaperpress.com/ptlens/

Cheers,


Rob Studdert
HURSTVILLE AUSTRALIA
Tel +61-2-9554-4110
UTC(GMT)  +10 Hours
[EMAIL PROTECTED]
http://members.ozemail.com.au/~distudio/publications/
Pentax user since 1986, PDMLer since 1998





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Dr E D F Williams
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