[Apologies for cross-posting]

[Please forward to colleagues who might be interested]
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Second Call for Papers

BioPPN 2012
3rd International Workshop on Biological Processes and Petri Nets
Hamburg, Germany, June 25, 2012

co-located with Petri Nets 2012&  ACSD 2012

http://www-dssz.informatik.tu-cottbus.de/BME/BioPPN2012

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*** IMPORTANT DATES ***

submission of papers: 1 April 2012
Notification: 1 May 2012
Final version due: 1 June 2012
Workshop: 25 June 2012


*** TOPICS ***

The goal of this workshop is to provide a platform for researchers
aiming at fundamental research and real life applications of Petri
nets in Systems and Synthetic Biology.

Topics of interest include, but are not limited to:

* standard Petri nets for qualitative modelling and analysis,
  if kinetics are unknown or deliberately abstracted away;
* discrete quantitative modelling by time(d) Petri nets;
* stochastic Petri nets to account for intrinsic noise of
  molecular fluctuation, and/or sources of extrinsic noise;
* continuous Petri nets (and thus Ordinary Differential Equations),
  back and forth;
* hybrid Petri nets, or how to handle
  different abstraction and time scales in biological processes;
* dedicated support of multi-scale issues;
* case studies of metabolic, signalling, regulatory, and
  combined networks, or other biological applications;
* dedicated analysis and simulation techniques;
* related tool debvelopment, including
  exchange formats, dedicated to biological processes;

Case studies in systems and synthetic biology demonstrating the
specific power by the combined use of different Petri net classes
are especially encouraged.


*** PAPER SUBMISSION ***

Submitted papers should describe original work that has not been
previously published and is not under review for publication elsewhere.
There are three categories of papers:

- Regular papers (<= 15 p.)
- "work in progress" papers (<= 15 p.)
- Short papers presenting original results (<= 6 p.);
  they can be selected for oral presentation.
- Posters up to A0 format.

A submission should be clearly assigned to one category.
All papers should be in LNCS format, and will have to be submitted via
EasyChair.

Based on the review process, a submission may be accepted as is, accepted
with minor changes, rejected or selected for oral presentation only.
In the latter case, a 1-page abstract will be published.

*** Workshop Proceedings ***

will be electronically published with CEUR Workshop Proceedings.
This does not involve a transfer of copyrights to a publisher.


*** Special Issue ***

Best papers will be proposed to be invited for a follow-up publication
in Transactions on Petri Nets and other models of Concurrency (ToPNoC).


*** PROGRAMME COMMITTEE CO-CHAIRS ***

Monika Heiner, D
Ralf Hofestädt, D


*** PROGRAMME COMMITTEE ***

David Angeli, I
Gianfranco Balbo, I
Rainer Breitling, NL, UK
Jorge Carneiro, PT
Claudine Chaouiya, F, PT
Ming Chen, CN
David Gilbert, UK
Simon Hardy, CA
Peter Kemper, US
Hanna Klaudel, F
Hiroshi Matsuno, JP
Satoru Miyano, JP
P.S. Thiagarajan, SG

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-----------------------------------------------
you might be interested in our latest paper:
www.springerlink.com/content/t21n70p613h75m64/
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Prof. Dr.-Ing. Monika Heiner
Brandenburg University of Technology at Cottbus
Computer Science Institute
= Data Structures and Software Dependability =

Postbox 10 13 44, 03013 Cottbus, Germany

http://www-dssz.informatik.tu-cottbus.de/
[email protected]
phone (+49-355) 69 3884,fax (+49-355) 69 3587
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