Jed,
Please see the error below. What is the approved way to recover from
something incomprehensible to me like this? Shouldn't a reconfigure clean up
all possible dangers?
Thanks
Barry
barry-smiths-macbook-pro:petsc-dev barrysmith$
./arch-gnu/conf/reconfigure-arch-gnu.py
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: alternateConfigureLibrary from
PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:49)
Compilers:
C Compiler: /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc -Wall
-Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3
CUDA Compiler: nvcc -g
Fortran Compiler: /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpif90
-Wall -Wno-unused-variable -Wno-unused-dummy-argument -g
Linkers:
Static linker: /usr/bin/ar cr
Dynamic linker: /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc
-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress
-Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3
MPI:
Includes: -I/Users/barrysmith/Src/petsc-dev/arch-gnu/include
X11:
Includes:
Library: -L/usr/X11R6/lib -lX11
BLAS/LAPACK: -llapack -lblas
c2html:
pthread:
sowing:
valgrind:
Includes: -I/opt/local/include
PETSc:
PETSC_ARCH: arch-gnu
PETSC_DIR: /Users/barrysmith/Src/petsc-dev
Clanguage: C
Scalar type: real
Precision: double
Memory alignment: 16
shared libraries: disabled
dynamic loading: disabled
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (legacy build):
make PETSC_DIR=/Users/barrysmith/Src/petsc-dev PETSC_ARCH=arch-gnu all
or (experimental with python):
PETSC_DIR=/Users/barrysmith/Src/petsc-dev PETSC_ARCH=arch-gnu
./config/builder.py
xxx=========================================================================xxx
barry-smiths-macbook-pro:petsc-dev barrysmith$ make cmake
make -j 2 -C /Users/barrysmith/Src/petsc-dev/arch-gnu
Scanning dependencies of target petsc
Error copying Fortran module "include/petscsys". Tried "include/PETSCSYS.mod"
and "include/petscsys.mod".
make[4]: ***
[CMakeFiles/petsc.dir/src/sys/f90-mod/petscsysmod.F.o.provides.build] Error 1
make[3]: *** [CMakeFiles/petsc.dir/src/sys/f90-mod/petscsysmod.F.o.provides]
Error 2
make[2]: *** [CMakeFiles/petsc.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [cmake] Error 2
