Added note: we do have --with-blacs=0 --with-hypre=0 etc - so --with-mpi=0 is not one of a kind option that need eliminating.
We default to --with-mpi=1 --with-blas-lapack=1 [as there are the basic dependencies for PETSc ], and --with-PACKAGENAME=0 for every other PACKAGENAME. The user has to explicitly enable other packages. [either by --download-PACAKGE or --with-PACKAGE=1 option - if its installed in standard search PATHs] --with-x is the funky one thats automatically enabled - if configure is able to find it. satish On Tue, 16 Feb 2010, Satish Balay wrote: > For one - the interface most users are looking for is > --with-sequential - or --without-mpi - which '-with-mpi=0' > represents.. They don't know are care about mpiuni [so download-mpiuni > is not really better] > > Also mpiuni is not distributed or built separately from petsc > sources/makefiles - and is akin to --with-sieve=1 > > Blas/lapack is not optional - hence no --with-blas-lapack=0 support. > > Satish > > On Tue, 16 Feb 2010, Barry Smith wrote: > > > > > --download-c-blas-lapack puts "bad" Blas/LAPACK into its own > > library. There is no --with-blaslapack=0 > > > > Shouldn't we eliminate -with-mpi=0 and instead have --download- > > mpiuni > > > > Barry > > > > Removes one more special case, and special cases are BAD! So > > obviously it is a good idea, let's see if anyone has a legitimate > > reason for rejecting it instead of knee-jerk conservatism. > > > > > > > > On Feb 16, 2010, at 8:31 PM, Satish Balay wrote: > > > > > This is a conflict with --with-mpi=0 and the curent default > > > --with-single-library=1 > > > > > > Ideally we should create libmpiuni.a [and a .so] even with > > > --with-single-library=1 - but I'm not sure how to do that cleanly. So > > > my current fix is to remove libmpiuni.a for > > > --with-single-library=1. [i.e libpetsc.a will have the mpiuni stuff as > > > well] > > > > > > Testing this change - and will push once I verify. > > > > > > Satish > > > > > > On Tue, 16 Feb 2010, Matthew Knepley wrote: > > > > > >> On Tue, Feb 16, 2010 at 8:16 PM, Dahai Guo <dhguo at ncsa.uiuc.edu> > > >> wrote: > > >> > > >>> > > >>> > > >>> Thanks, Barry. > > >>> > > >>> > > >>> > > >>> I tried to configure and built petsc-dev on AIX with the following > > >>> options, > > >>> but failed when "make test" as follow "ld: 0706-006 Cannot find or > > >>> open > > >>> library file: -l mpiuni". I used the same options for petsc-3.0, > > >>> everything > > >>> is fine. Would you tell me how to fix it? > > >>> > > >> > > >> Always send configure.log > > >> > > >> Matt > > >> > > >> > > >>> Dahai > > >>> > > >>> > > >>> > > >>> export OBJECT_MODE=64 # for 64/32-bit ar > > >>> export PETSC_DIR=$PWD > > >>> > > >>> config/configure.py --with-mpi=0 --with-64-bit-pointers=1 --with- > > >>> cc=xlc_r > > >>> --with-cxx=xlC_r --with-fc=xlf_r COPTFLAGS='-q64 -O3 -qstrict - > > >>> qmaxmem=-1 > > >>> -qarch=pwr6 -qtune=pwr6' FOPTFLAGS='-q64 -O3 -qstrict -qmaxmem=-1 > > >>> -qarch=pwr6 -qtune=pwr6' CXXOPTFLAGS='-q64 -O3 -qstrict -qmaxmem=-1 > > >>> -qarch=pwr6 -qtune=pwr6' > > >>> > > >>> > > >>> > > >>> > > >>> > > >>> bash-3.1$ make test > > >>> Running test examples to verify correct installation > > >>> --------------Error detected during compile or > > >>> link!----------------------- > > >>> See > > >>> http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html > > >>> xlc_r -o ex19.o -c -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 > > >>> -I/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/include > > >>> -I/blhome/dhguo/petsc-dev/include -I/blhome/dhguo/petsc-dev/ > > >>> include/mpiuni > > >>> -D__SDIR__="src/snes/examples/tutorials/" ex19.c > > >>> xlc_r -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 -o > > >>> ex19 ex19.o -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lpetsc -lX11 - > > >>> lessl > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lmpiuni -lm -ldl > > >>> -L/usr/vac/lib -lxlopt -lxl -lpthreads -lxlf90 -L/usr/lpp/xlf/lib - > > >>> lxlf > > >>> -lxlomp_ser -lm -ldl -lxlopt -lxl -lpthreads -ldl > > >>> ld: 0706-006 Cannot find or open library file: -l mpiuni > > >>> ld:open(): No such file or directory > > >>> make: The error code from the last command is 255. > > >>> make: Ignored error code 255 from last command. > > >>> /usr/linux/bin/rm -f ex19.o > > >>> --------------Error detected during compile or > > >>> link!----------------------- > > >>> See > > >>> http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html > > >>> xlf_r -c -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 > > >>> -I/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/include > > >>> -I/blhome/dhguo/petsc-dev/include -I/blhome/dhguo/petsc-dev/ > > >>> include/mpiuni > > >>> -I/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/include > > >>> -I/blhome/dhguo/petsc-dev/include/mpiuni -o ex5f.o ex5f.F > > >>> ** main === End of Compilation 1 === > > >>> ** forminitialguess === End of Compilation 2 === > > >>> ** initialguesslocal === End of Compilation 3 === > > >>> ** formfunctionlocal === End of Compilation 4 === > > >>> ** formjacobianlocal === End of Compilation 5 === > > >>> 1501-510 Compilation successful for file ex5f.F. > > >>> xlf_r -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 -o > > >>> ex5f ex5f.o -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lpetsc -lX11 - > > >>> lessl > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lmpiuni -lm -ldl > > >>> -L/usr/vac/lib -lxlopt -lxl -lpthreads -lxlf90 -L/usr/lpp/xlf/lib - > > >>> lxlf > > >>> -lxlomp_ser -lm -ldl -lxlopt -lxl -lpthreads -ldl > > >>> ld: 0706-006 Cannot find or open library file: -l mpiuni > > >>> ld:open(): No such file or directory > > >>> make: The error code from the last command is 255. > > >>> make: Ignored error code 255 from last command. > > >>> /usr/linux/bin/rm -f ex5f.o > > >>> Completed test examples > > >>> > > >>> > > >>> > > >>> > > >>> > > >>> ----- Original Message ----- > > >>> From: "Barry Smith" <bsmith at mcs.anl.gov> > > >>> To: petsc-maint at mcs.anl.gov, "Dahai Guo" <dhguo at ncsa.uiuc.edu> > > >>> Sent: Tuesday, February 16, 2010 1:40:53 PM GMT -06:00 Central > > >>> America > > >>> Subject: Re: [petsc-maint #40976] convert a matrix from CSR format > > >>> to BCSR > > >>> format > > >>> > > >>> > > >>> Sorry, I forgot to check the code last weekend. > > >>> > > >>> I cannot reproduce your problem. > > >>> > > >>> Looks like you are using petsc 3.0.0. That is completely insane! > > >>> This problem has been fixed for a year. You should be using petsc- > > >>> dev > > >>> http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html > > >>> it will make your live much easier. > > >>> > > >>> > > >>> Barry > > >>> > > >>> On Feb 15, 2010, at 10:38 AM, Dahai Guo wrote: > > >>> > > >>>> > > >>>> > > >>>> Barry: > > >>>> > > >>>> > > >>>> > > >>>> In the function ?MatGetFactor? in src/mat/interface/matrix.c, it > > >>>> only checks if the matsolver is available for subclass, but NOT > > >>>> further check for the AIJ/BAIJ. I think it is one of the reasons > > >>>> that a subclass(e.g. crl ) inherited from AIJ/BAIJ can not inherit > > >>>> "MatGetFactor" from AIJ/BAIJ. > > >>>> > > >>>> Is there some special reason for designing it in this way? Or it is > > >>>> just a bug? How to improve it? Please advise. > > >>>> > > >>>> Thanks, > > >>>> > > >>>> Dahai > > >>>> > > >>>> > > >>>> > > >>>> > > >>>> ----- Original Message ----- > > >>>> From: "Barry Smith" <bsmith at mcs.anl.gov> > > >>>> To: petsc-maint at mcs.anl.gov, "Dahai Guo" <dhguo at ncsa.uiuc.edu> > > >>>> Sent: Thursday, February 11, 2010 9:45:24 PM GMT -06:00 US/Canada > > >>>> Central > > >>>> Subject: Re: [petsc-maint #40976] convert a matrix from CSR format > > >>>> to BCSR format > > >>>> > > >>>> > > >>>> Dahai, > > >>>> > > >>>> You have to switch to a decent email client. Stuff you send is > > >>>> never in attachments, it is always crammed into the message as one > > >>>> long piece of text. > > >>>> > > >>>> I'll try to reproduce the problem tomorrow, > > >>>> > > >>>> Barry > > >>>> > > >>>> On Feb 11, 2010, at 8:01 PM, Dahai Guo wrote: > > >>>> > > >>>>> tried CSR format, it showed the similar problem as follow.??? I > > >>>>> attached the test code and datafile. > > >>>> > > >>>> > > >>>> Barry: > > >>>> > > >>>> In the function ?MatGetFactor? in src/mat/interface/matrix.c, it > > >>>> only checks if the matsolver is available for subclass, but NOT > > >>>> further check for the AIJ/BAIJ. I think it is one of the reasons > > >>>> that a subclass(e.g. crl ) inherited from AIJ/BAIJ can not inherit > > >>>> "MatGetFactor" from AIJ/BAIJ. > > >>>> > > >>>> Is there some special reason for designing it in this way? Or it is > > >>>> just a bug? How to improve it? Please advise. > > >>>> > > >>>> Thanks, > > >>>> > > >>>> Dahai > > >>>> > > >>>> > > >>>> ----- Original Message ----- > > >>>> From: "Barry Smith" <bsmith at mcs.anl.gov> > > >>>> To: petsc-maint at mcs.anl.gov, "Dahai Guo" <dhguo at ncsa.uiuc.edu> > > >>>> Sent: Thursday, February 11, 2010 9:45:24 PM GMT -06:00 US/Canada > > >>>> Central > > >>>> Subject: Re: [petsc-maint #40976] convert a matrix from CSR format > > >>>> to BCSR format > > >>>> > > >>>> > > >>>> Dahai, > > >>>> > > >>>> You have to switch to a decent email client. Stuff you send is > > >>>> never in attachments, it is always crammed into the message as one > > >>>> long piece of text. > > >>>> > > >>>> I'll try to reproduce the problem tomorrow, > > >>>> > > >>>> Barry > > >>>> > > >>>> On Feb 11, 2010, at 8:01 PM, Dahai Guo wrote: > > >>>> > > >>>>> tried CSR format, it showed the similar problem as follow.??? I > > >>>>> attached the test code and datafile. > > >>>> > > >>> > > >>> > > >>> > > >>> Thanks, Barry. > > >>> > > >>> > > >>> > > >>> I tried to configure and built petsc-dev on AIX with the following > > >>> options, > > >>> but failed when "make test" as follow "ld: 0706-006 Cannot find or > > >>> open > > >>> library file: -l mpiuni". I used the same options for petsc-3.0, > > >>> everything > > >>> is fine. Would you tell me how to fix it? > > >>> > > >>> > > >>> > > >>> Dahai > > >>> > > >>> > > >>> > > >>> export OBJECT_MODE=64 # for 64/32-bit ar > > >>> export PETSC_DIR=$PWD > > >>> > > >>> config/configure.py --with-mpi=0 --with-64-bit-pointers=1 --with- > > >>> cc=xlc_r > > >>> --with-cxx=xlC_r --with-fc=xlf_r COPTFLAGS='-q64 -O3 -qstrict - > > >>> qmaxmem=-1 > > >>> -qarch=pwr6 -qtune=pwr6' FOPTFLAGS='-q64 -O3 -qstrict -qmaxmem=-1 > > >>> -qarch=pwr6 -qtune=pwr6' CXXOPTFLAGS='-q64 -O3 -qstrict -qmaxmem=-1 > > >>> -qarch=pwr6 -qtune=pwr6' > > >>> > > >>> > > >>> > > >>> > > >>> > > >>> bash-3.1$ make test > > >>> Running test examples to verify correct installation > > >>> --------------Error detected during compile or > > >>> link!----------------------- > > >>> See > > >>> http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html > > >>> xlc_r -o ex19.o -c -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 > > >>> -I/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/include > > >>> -I/blhome/dhguo/petsc-dev/include -I/blhome/dhguo/petsc-dev/ > > >>> include/mpiuni > > >>> -D__SDIR__="src/snes/examples/tutorials/" ex19.c > > >>> xlc_r -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 -o > > >>> ex19 ex19.o -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lpetsc -lX11 - > > >>> lessl > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lmpiuni -lm -ldl > > >>> -L/usr/vac/lib -lxlopt -lxl -lpthreads -lxlf90 -L/usr/lpp/xlf/lib - > > >>> lxlf > > >>> -lxlomp_ser -lm -ldl -lxlopt -lxl -lpthreads -ldl > > >>> ld: 0706-006 Cannot find or open library file: -l mpiuni > > >>> ld:open(): No such file or directory > > >>> make: The error code from the last command is 255. > > >>> make: Ignored error code 255 from last command. > > >>> /usr/linux/bin/rm -f ex19.o > > >>> --------------Error detected during compile or > > >>> link!----------------------- > > >>> See > > >>> http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html > > >>> xlf_r -c -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 > > >>> -I/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/include > > >>> -I/blhome/dhguo/petsc-dev/include -I/blhome/dhguo/petsc-dev/ > > >>> include/mpiuni > > >>> -I/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/include > > >>> -I/blhome/dhguo/petsc-dev/include/mpiuni -o ex5f.o ex5f.F > > >>> ** main === End of Compilation 1 === > > >>> ** forminitialguess === End of Compilation 2 === > > >>> ** initialguesslocal === End of Compilation 3 === > > >>> ** formfunctionlocal === End of Compilation 4 === > > >>> ** formjacobianlocal === End of Compilation 5 === > > >>> 1501-510 Compilation successful for file ex5f.F. > > >>> xlf_r -q64 -O3 -qstrict -qmaxmem=-1 -qarch=pwr6 - > > >>> qtune=pwr6 -o > > >>> ex5f ex5f.o -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lpetsc -lX11 - > > >>> lessl > > >>> -L/blhome/dhguo/petsc-dev/aix5.3.0.0-c-debug/lib -lmpiuni -lm -ldl > > >>> -L/usr/vac/lib -lxlopt -lxl -lpthreads -lxlf90 -L/usr/lpp/xlf/lib - > > >>> lxlf > > >>> -lxlomp_ser -lm -ldl -lxlopt -lxl -lpthreads -ldl > > >>> ld: 0706-006 Cannot find or open library file: -l mpiuni > > >>> ld:open(): No such file or directory > > >>> make: The error code from the last command is 255. > > >>> make: Ignored error code 255 from last command. > > >>> /usr/linux/bin/rm -f ex5f.o > > >>> Completed test examples > > >>> > > >>> > > >>> > > >>> > > >>> ----- Original Message ----- > > >>> From: "Barry Smith" <bsmith at mcs.anl.gov> > > >>> To: petsc-maint at mcs.anl.gov, "Dahai Guo" <dhguo at ncsa.uiuc.edu> > > >>> Sent: Tuesday, February 16, 2010 1:40:53 PM GMT -06:00 Central > > >>> America > > >>> Subject: Re: [petsc-maint #40976] convert a matrix from CSR format > > >>> to BCSR > > >>> format > > >>> > > >>> > > >>> Sorry, I forgot to check the code last weekend. > > >>> > > >>> I cannot reproduce your problem. > > >>> > > >>> Looks like you are using petsc 3.0.0. That is completely insane! > > >>> This problem has been fixed for a year. You should be using petsc- > > >>> dev > > >>> http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html > > >>> it will make your live much easier. > > >>> > > >>> > > >>> Barry > > >>> > > >>> On Feb 15, 2010, at 10:38 AM, Dahai Guo wrote: > > >>> > > >>>> > > >>>> > > >>>> Barry: > > >>>> > > >>>> > > >>>> > > >>>> In the function ?MatGetFactor? in src/mat/interface/matrix.c, it > > >>>> only checks if the matsolver is available for subclass, but NOT > > >>>> further check for the AIJ/BAIJ. I think it is one of the reasons > > >>>> that a subclass(e.g. crl ) inherited from AIJ/BAIJ can not inherit > > >>>> "MatGetFactor" from AIJ/BAIJ. > > >>>> > > >>>> Is there some special reason for designing it in this way? Or it is > > >>>> just a bug? How to improve it? Please advise. > > >>>> > > >>>> Thanks, > > >>>> > > >>>> Dahai > > >>>> > > >>>> > > >>>> > > >>>> > > >>>> ----- Original Message ----- > > >>>> From: "Barry Smith" <bsmith at mcs.anl.gov> > > >>>> To: petsc-maint at mcs.anl.gov, "Dahai Guo" <dhguo at ncsa.uiuc.edu> > > >>>> Sent: Thursday, February 11, 2010 9:45:24 PM GMT -06:00 US/Canada > > >>>> Central > > >>>> Subject: Re: [petsc-maint #40976] convert a matrix from CSR format > > >>>> to BCSR format > > >>>> > > >>>> > > >>>> Dahai, > > >>>> > > >>>> You have to switch to a decent email client. Stuff you send is > > >>>> never in attachments, it is always crammed into the message as one > > >>>> long piece of text. > > >>>> > > >>>> I'll try to reproduce the problem tomorrow, > > >>>> > > >>>> Barry > > >>>> > > >>>> On Feb 11, 2010, at 8:01 PM, Dahai Guo wrote: > > >>>> > > >>>>> tried CSR format, it showed the similar problem as follow.??? I > > >>>>> attached the test code and datafile. > > >>>> > > >>>> > > >>>> Barry: > > >>>> > > >>>> In the function ?MatGetFactor? in src/mat/interface/matrix.c, it > > >>>> only checks if the matsolver is available for subclass, but NOT > > >>>> further check for the AIJ/BAIJ. I think it is one of the reasons > > >>>> that a subclass(e.g. crl ) inherited from AIJ/BAIJ can not inherit > > >>>> "MatGetFactor" from AIJ/BAIJ. > > >>>> > > >>>> Is there some special reason for designing it in this way? Or it is > > >>>> just a bug? How to improve it? Please advise. > > >>>> > > >>>> Thanks, > > >>>> > > >>>> Dahai > > >>>> > > >>>> > > >>>> ----- Original Message ----- > > >>>> From: "Barry Smith" <bsmith at mcs.anl.gov> > > >>>> To: petsc-maint at mcs.anl.gov, "Dahai Guo" <dhguo at ncsa.uiuc.edu> > > >>>> Sent: Thursday, February 11, 2010 9:45:24 PM GMT -06:00 US/Canada > > >>>> Central > > >>>> Subject: Re: [petsc-maint #40976] convert a matrix from CSR format > > >>>> to BCSR format > > >>>> > > >>>> > > >>>> Dahai, > > >>>> > > >>>> You have to switch to a decent email client. Stuff you send is > > >>>> never in attachments, it is always crammed into the message as one > > >>>> long piece of text. > > >>>> > > >>>> I'll try to reproduce the problem tomorrow, > > >>>> > > >>>> Barry > > >>>> > > >>>> On Feb 11, 2010, at 8:01 PM, Dahai Guo wrote: > > >>>> > > >>>>> tried CSR format, it showed the similar problem as follow.??? I > > >>>>> attached the test code and datafile. > > >>>> > > >>> > > >>> > > >>> > > >> > > >> > > >> > > > > > > > > > > >
