Both windows just disappear and program ends if I hit y or Y. Maybe a Mac thing.
Barry On Jun 30, 2012, at 7:51 PM, Jed Brown wrote: > Did you try this? > > mpiexec -n 2 xterm -e valgrind --db-attach=yes ./ex -args > > On Sat, Jun 30, 2012 at 4:33 PM, Barry Smith <bsmith at mcs.anl.gov> wrote: > > Has anyone documented a simple way to run parallel programs with mpiexec > and valgrind and use the --db-attach=yes option to use the debugger on a > process to see what is going on? > > My simple minded attempt leads to uselessness; it tries to ask me about > using the debugger but seems to be in tty hell. > > Thanks > > Barry > > > barry-smiths-macbook-pro:LuLu barrysmith$ > ~/Src/petsc-dev/arch-gnu/bin/mpiexec -n 2 valgrind --tool=memcheck > --db-attach=yes --dsymutil=yes --num-callers=20 -q ./ex26 -ts_type beuler > --55788-- run: /usr/bin/dsymutil "./ex26" > --55789-- run: /usr/bin/dsymutil "./ex26" > error: No such file or directory - old dSYM file cannot be overwritten: > old: './ex26.dSYM/Contents/Resources/DWARF/ex26' > new:'./ex26.dSYM/Contents/Resources/DWARF/ex26.x86_64'. > --55789-- run: /usr/bin/dsymutil > "/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libpetsc.dylib" > --55788-- run: /usr/bin/dsymutil > "/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libpetsc.dylib" > error: No such file or directory - old dSYM file cannot be overwritten: > old: > '/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libpetsc.dylib.dSYM/Contents/Resources/DWARF/libpetsc.dylib' > > new:'/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libpetsc.dylib.dSYM/Contents/Resources/DWARF/libpetsc.dylib.x86_64'. > --55788-- run: /usr/bin/dsymutil > "/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libparmetis.dylib" > --55789-- run: /usr/bin/dsymutil > "/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libparmetis.dylib" > --55788-- run: /usr/bin/dsymutil > "/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libmetis.dylib" > --55789-- run: /usr/bin/dsymutil > "/Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libmetis.dylib" > > warning: (x86_64) > /Users/barrysmith/Src/petsc-dev/externalpackages/mpich2-1.4.1p1/lib/.tmp/wtimef.o > unable to open object file > warning: no debug symbols in executable (-arch x86_64) > 4x4 grid, water viscosity = 1, oil vescosity # = 1, > connate water saturation # = 0 irreducible oil saturation # =0 > timestep 0 time 0 > ==55789== Use of uninitialised value of size 8 > ==55789== at 0x100002B3C: Mobility (ex26.c:116) > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== > ==55789== > ==55789== ---- Attach to debugger ? --- [Return/N/n/Y/y/C/c] ---- ==55789== > Invalid read of size 8 > ==55789== at 0x100002B3C: Mobility (ex26.c:116) > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== Address 0x8 is not stack'd, malloc'd or (recently) free'd > ==55789== > ==55789== Conditional jump or move depends on uninitialised value(s) > ==55789== at 0x102738F7B: signal__ (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x100181B19: PetscDefaultSignalHandler (signal.c:143) > ==55789== by 0x1001818AE: PetscSignalHandler_Private (signal.c:53) > ==55789== by 0x138048EF3: ??? > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== > ==55789== Conditional jump or move depends on uninitialised value(s) > ==55789== at 0x102738FD7: sigaction (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x102738FA6: signal__ (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x100181B19: PetscDefaultSignalHandler (signal.c:143) > ==55789== by 0x1001818AE: PetscSignalHandler_Private (signal.c:53) > ==55789== by 0x138048EF3: ??? > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== > ==55789== Conditional jump or move depends on uninitialised value(s) > ==55789== at 0x102738FDC: sigaction (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x102738FA6: signal__ (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x100181B19: PetscDefaultSignalHandler (signal.c:143) > ==55789== by 0x1001818AE: PetscSignalHandler_Private (signal.c:53) > ==55789== by 0x138048EF3: ??? > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== > ==55789== Conditional jump or move depends on uninitialised value(s) > ==55789== at 0x102738FE1: sigaction (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x102738FA6: signal__ (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x100181B19: PetscDefaultSignalHandler (signal.c:143) > ==55789== by 0x1001818AE: PetscSignalHandler_Private (signal.c:53) > ==55789== by 0x138048EF3: ??? > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== > ==55789== Syscall param sigaction(signum) contains uninitialised byte(s) > ==55789== at 0x102739032: __sigaction (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x102738FA6: signal__ (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x100181B19: PetscDefaultSignalHandler (signal.c:143) > ==55789== by 0x1001818AE: PetscSignalHandler_Private (signal.c:53) > ==55789== by 0x138048EF3: ??? > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55789== > ==55789== > ==55789== Process terminating with default action of signal 11 (SIGSEGV) > ==55789== General Protection Fault > ==55789== at 0x1027F0FC1: dyld_stub_binder (in /usr/lib/libSystem.B.dylib) > ==55789== by 0x101C4549F: ??? (in > /Users/barrysmith/Src/petsc-dev/arch-gnu/lib/libpetsc.dylib) > ==55789== by 0x100181B31: PetscDefaultSignalHandler (signal.c:144) > ==55789== by 0x1001818AE: PetscSignalHandler_Private (signal.c:53) > ==55789== by 0x138048EF3: ??? > ==55789== by 0x10000637F: FormIFunctionLocal (ex26.c:579) > ==55789== by 0x100007791: FormIFunction (ex26.c:680) > ==55789== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55789== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55789== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55789== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55789== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55789== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55789== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55789== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55789== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55789== by 0x1000047A8: main (ex26.c:327) > ==55788== Invalid read of size 8 > ==55788== at 0x100006443: FormIFunctionLocal (ex26.c:581) > ==55788== by 0x100007791: FormIFunction (ex26.c:680) > ==55788== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55788== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55788== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55788== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55788== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55788== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55788== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55788== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55788== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55788== by 0x1000047A8: main (ex26.c:327) > ==55788== Address 0x1045cf920 is 1,936 bytes inside a block of size 1,940 > alloc'd > ==55788== at 0x1000251EF: malloc (vg_replace_malloc.c:236) > ==55788== by 0x1000CC71B: PetscMallocAlign (mal.c:37) > ==55788== by 0x1000CDF89: PetscTrMallocDefault (mtr.c:190) > ==55788== by 0x1002B338B: VecGetArray2d (rvector.c:1759) > ==55788== by 0x1009430B0: DMDAVecGetArray (dagetarray.c:72) > ==55788== by 0x100007536: FormIFunction (ex26.c:673) > ==55788== by 0x100DACF67: TSComputeIFunction (ts.c:374) > ==55788== by 0x100DA3778: SNESTSFormFunction_Theta (theta.c:204) > ==55788== by 0x100DC2D27: SNESTSFormFunction (ts.c:2560) > ==55788== by 0x100CACE87: SNESComputeFunction (snes.c:1901) > ==55788== by 0x100CF7651: SNESSolve_LS (ls.c:161) > ==55788== by 0x100CBF982: SNESSolve (snes.c:3549) > ==55788== by 0x100DA223F: TSStep_Theta (theta.c:114) > ==55788== by 0x100DBC4B9: TSStep (ts.c:1827) > ==55788== by 0x100DBDA12: TSSolve (ts.c:1951) > ==55788== by 0x1000047A8: main (ex26.c:327) > ==55788== > ==55788== > ==55788== ---- Attach to debugger ? --- [Return/N/n/Y/y/C/c] ---- > ===================================================================================== > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > = EXIT CODE: 11 > = CLEANING UP REMAINING PROCESSES > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > ================================================================================= > >
