On Nov 14, 2012, at 10:32 PM, Hong Zhang <hzhang at mcs.anl.gov> wrote:
> First two, "ifbcgs and tfibcgs" and "Broken MatPtAP" are fixed and pushed. Excellent, thanks Barry > Hong > > On Wed, Nov 14, 2012 at 8:57 PM, Barry Smith <bsmith at mcs.anl.gov> wrote: >> >> There are a bunch of nightly tests with errors. Please check through them >> and see which ones you are guilty of and fix. >> >> Thanks >> >> Barry >> >> >> >> ifbcgs and tfibcgs are in test examples but don't appear to be types in KSP?? >> >> >> >> [0]PETSC ERROR: --------------------- Error Message >> ------------------------------------ >>> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing external >>> package needed for type: >>> see http://www.mcs.anl.gov/petsc/documentation/installation.html#external! >>> [0]PETSC ERROR: Unable to find requested KSP type ifbcgs! >> >>> [0]PETSC ERROR: KSPSetType() line 659 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcreate.c >>> [0]PETSC ERROR: KSPSetFromOptions() line 356 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcl.c >>> [0]PETSC ERROR: main() line 203 in src/ksp/ksp/examples/tests/ex39.c >>> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0 >> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/examples/tests >> Possible problem with with ex39_1, diffs above >> >>> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing external >>> package needed for type: >>> see http://www.mcs.anl.gov/petsc/documentation/installation.html#external! >>> [0]PETSC ERROR: Unable to find requested KSP type tfibcgs! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development HG revision: >>> 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 >>> -0700 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex2 on a arch-gnu named Barrys-MacBook-Pro.local by >>> barrysmith Wed Nov 14 19:17:57 2012 >>> [0]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [0]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: KSPSetType() line 659 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcreate.c >>> [0]PETSC ERROR: KSPSetFromOptions() line 356 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itcl.c >>> [0]PETSC ERROR: main() line 192 in src/ksp/ksp/examples/tutorials/ex2.c >>> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 86) - process 0 >> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/examples/tutorials >> Possible problem with with ex2_tfibcgs_2, diffs above >> >> ======================================================================================================================= >> >> Broken MatPtAP >> >>> [0]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [0]PETSC ERROR: Arguments are incompatible! >>> [0]PETSC ERROR: MatPtAP requires A, mpiaij, to be compatible with P, >>> mpimaij! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development HG revision: >>> 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 >>> -0700 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex43 on a arch-gnu named Barrys-MacBook-Pro.local by >>> barrysmith Wed Nov 14 19:18:10 2012 >>> [0]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [0]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: MatPtAP() line 8256 in >>> /Users/barrysmith/Src/petsc-dev/src/mat/interface/matrix.c >>> [0]PETSC ERROR: PCSetUp_MG() line 596 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/pc/impls/mg/mg.c >>> [0]PETSC ERROR: PCSetUp() line 832 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/pc/interface/precon.c >>> [0]PETSC ERROR: KSPSetUp() line 278 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c >>> [0]PETSC ERROR: KSPSolve() line 402 in >>> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c >>> [0]PETSC ERROR: solve_stokes_2d_coupled() line 1501 in >>> src/ksp/ksp/examples/tutorials/ex43.c >>> [0]PETSC ERROR: main() line 1620 in src/ksp/ksp/examples/tutorials/ex43.c >>> application called MPI_Abort(MPI_COMM_WORLD, 75) - process 0 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 75) - process 0 >> /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/examples/tutorials >> Possible problem with with ex43_3, diffs above >> >> ======================================================================================================================= >> >> < 1 SNES Function norm 22.8975 >> < 2 SNES Function norm 20.6078 >> < 3 SNES Function norm 18.547 >> < 4 SNES Function norm 16.6923 >> < 5 SNES Function norm 15.0231 >> < 6 SNES Function norm 13.5208 >> < 7 SNES Function norm 4.51122 >> < 8 SNES Function norm 2.14075 >> < 9 SNES Function norm 1.67019e-05 >> < 10 SNES Function norm 9.632e-11 >> < number of Newton iterations = 10; result = CONVERGED_FNORM_RELATIVE >> < errors: av |u-uexact| = 1.287e-03 >> < |u-uexact|_inf = 7.882e-03 >> --- >>> number of Newton iterations = 0; result = DIVERGED_LINE_SEARCH >>> errors: av |u-uexact| = 7.850e+00 >>> |u-uexact|_inf = 1.191e+02 >> /Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials >> Possible problem with with ex9_1, diffs above >> >> ======================================================================================================================= >> >> Memory leak in fieldsplit >> >>> [ 0]16 bytes PetscThreadCommInitialize() line 1232 in >>> /Users/barrysmith/Src/petsc-dev/src/sys/threadcomm/interface/threadcomm.c >>> [0] PetscThreadCommInitializePackage() line 51 in >>> /Users/barrysmith/Src/petsc-dev/src/sys/threadcomm/interface/dlregisthreadcomm.c >>> [0] PetscInitialize() line 651 in >>> /Users/barrysmith/Src/petsc-dev/src/sys/objects/pinit.c >>> [ 0]160 bytes PetscThreadCommInitialize() line 1228 in >>> /Users/barrysmith/Src/petsc-dev/src/sys/threadcomm/interfac/Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials >> Possible problem with with ex19_fieldsplit_4, diffs above >> >> ======================================================================================================================= >> >> Broken stuff in FAS >> >> >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, >>> probably memory access out of range >>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger >>> [0]PETSC ERROR: or see >>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: >>> or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >>> corruption errors >>> [0]PETSC ERROR: likely location of problem given in stack below >>> [0]PETSC ERROR: --------------------- Stack Frames >>> ------------------------------------ >>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, >>> [0]PETSC ERROR: INSTEAD the line number of the start of the function >>> [0]PETSC ERROR: is given. >>> [0]PETSC ERROR: [0] DMSNESGetContextWrite line 239 >>> /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c >>> [0]PETSC ERROR: [0] DMSNESSetJacobian line 525 >>> /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c >>> [0]PETSC ERROR: [0] SNESSetJacobian line 2348 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESSetUpMatrices line 429 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESSetUp_LS line 300 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c >>> [0]PETSC ERROR: [0] SNESSetUp line 2449 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESFASDownSmooth_Private line 416 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [0] SNESFASCoarseCorrection line 543 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESFASCycle_Multiplicative line 688 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve_FAS line 713 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/fas/fas.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [0]PETSC ERROR: Signal received! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development HG revision: >>> 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 >>> -0700 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex19 on a arch-gnu named Barrys-MacBook-Pro.local by >>> barrysmith Wed Nov 14 19:20:52 2012 >>> [0]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [0]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: User provided function() line 0 in unknown directory >>> unknown file >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >> /Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials >> Possible problem with ex19_fas, diffs above >> >> ======================================================================================================================= >> >> Error in SNES example bad crash >> >> >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, >>> probably memory access out of range >>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger >>> [0]PETSC ERROR: or see >>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: >>> or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >>> corruption errors >>> [1]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, >>> probably memory access out of range >>> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger >>> [1]PETSC ERROR: or see >>> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: >>> or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory >>> corruption errors >>> [0]PETSC ERROR: likely location of problem given in stack below >>> [0]PETSC ERROR: --------------------- Stack Frames >>> ------------------------------------ >>> [1]PETSC ERROR: likely location of problem given in stack below >>> [1]PETSC ERROR: --------------------- Stack Frames >>> ------------------------------------ >>> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, >>> [1]PETSC ERROR: INSTEAD the line number of the start of the function >>> [1]PETSC ERROR: is given. >>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, >>> [0]PETSC ERROR: INSTEAD the line number of the start of the function >>> [0]PETSC ERROR: [1]PETSC ERROR: [1] ComputeFunction line 155 >>> src/snes/examples/tutorials/ex22.c >>> [1]PETSC ERROR: [1] SNES user function line 0 unknownunknown >>> [1]PETSC ERROR: [1] SNESComputeFunction line 1928 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [1]PETSC ERROR: [1] SNESSolve_LS line 144 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c >>> [1]PETSC ERROR: is given. >>> [0]PETSC ERROR: [0] ComputeFunction line 155 >>> src/snes/examples/tutorials/ex22.c >>> [0]PETSC ERROR: [0] SNES user function line 0 unknownunknown >>> [0]PETSC ERROR: [0] SNESComputeFunction line 1928 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: [1] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0] SNESSolve_LS line 144 >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c >>> [0]PETSC ERROR: [0] SNESSolve line 3535 >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [1]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [1]PETSC ERROR: Signal received! >>> [1]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [1]PETSC ERROR: [0]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [0]PETSC ERROR: Signal received! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development HG revision: >>> 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 >>> -0700 >>> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [1]PETSC ERROR: See docs/index.html for manual pages. >>> [1]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> Petsc Development HG revision: 1bebacb504435f8e678fe74ff73d827eb94edce3 HG >>> Date: Mon Nov 12 12:26:42 2012 -0700 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: [1]PETSC ERROR: ./ex22 on a arch-gnu named >>> Barrys-MacBook-Pro.local by barrysmith Wed Nov 14 19:20:56 2012 >>> [1]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [1]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [1]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [1]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> ./ex22 on a arch-gnu named Barrys-MacBook-Pro.local by barrysmith Wed Nov >>> 14 19:20:56 2012 >>> [0]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [0]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: User provided function() line 0 in unknown directory >>> unknown file >>> [1]PETSC ERROR: User provided function() line 0 in unknown directory >>> unknown file >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>> [cli_1]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 >> /Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials >> Possible problem with with ex22_1, diffs above >> >> ======================================================================================================================= >> >> >> /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc -o ex30.o -c -PIC -Wall >> -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline >> -O0 -fopenmp -I/Users/barrysmith/Src/petsc-dev/include >> -I/Users/barrysmith/Src/petsc-dev/arch-gnu/include >> -I/usr/local/include/libAfterImage/ -I/opt/X11/include >> -I/Users/barrysmith/Src/ams-dev/include -I/opt/local/include >> -D__INSDIR__=src/snes/examples/tutorials/ ex30.c >> ex30.c: In function ?XMomentumResidual?: >> ex30.c:507: error: expected expression before ?PetscScalar? >> ex30.c:519: error: expected expression before ?PetscScalar? >> ex30.c:519: error: too few arguments to function ?Viscosity? >> ex30.c:520: error: expected expression before ?PetscScalar? >> ex30.c:520: error: too few arguments to function ?Viscosity? >> ex30.c: In function ?ZMomentumResidual?: >> ex30.c:565: error: expected expression before ?PetscScalar? >> ex30.c:567: error: expected expression before ?PetscScalar? >> ex30.c: In function ?XNormalStress?: >> ex30.c:734: error: expected expression before ?PetscScalar? >> ex30.c:734: error: too few arguments to function ?Viscosity? >> ex30.c:742: error: expected expression before ?PetscScalar? >> ex30.c: In function ?ZNormalStress?: >> ex30.c:775: error: expected expression before ?PetscScalar? >> ex30.c:775: error: too few arguments to function ?Viscosity? >> ex30.c:781: error: expected expression before ?PetscScalar? >> make[7]: [ex30.o] Error 1 (ignored) >> /Users/barrysmith/Src/petsc-dev/arch-gnu/bin/mpicc -fopenmp >> -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress >> -Wl,-commons,use_dylibs -Wl,-search_paths_first >> -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress >> -Wl,-commons,use_dylibs -Wl,-search_paths_first -PIC -Wall -Wwrite-strings >> -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -fopenmp -o >> ex30 ex30.o -L/Users/barrysmith/Src/petsc-dev/arch-gnu/lib >> -L/Users/barrysmith/Src/petsc-dev/arch-gnu/lib -lpetsc -lcmumps -ldmumps >> -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lblacs -lHYPRE >> -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 >> -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 >> -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 >> -L/usr/llvm-gcc-4.2/lib/gcc >> -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 >> -L/usr/llvm-gcc-4.2/lib >> -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib -lmpichcxx >> -lstdc++ -lml -lmpichcxx -lstdc++ -lsuperlu_4.3 -lsuperlu_dist_3.1 -llapack >> -lblas -L/usr/local/include/libAfterImage/../../lib -lAfterImage -ltriangle >> -L/opt/X11/lib -lX11 -L/Users/barrysmith/Src/ams-dev/lib -lamspub -lparmetis >> -lmetis -lfftw3_mpi -lfftw3 -lptesmumps -lptscotch -lptscotcherr -lpthread >> -lyaml -lmpichf90 -lgfortran >> -L/usr/local/lib/gcc/x86_64-apple-darwin10.7.0/4.6.0 -L/usr/local/lib >> -lgfortran -lgcc_ext.10.5 -lquadmath -lm -lm -lmpichcxx -lstdc++ -lm -lz -lz >> -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -ldl >> i686-apple-darwin11-llvm-gcc-4.2: ex30.o: No such file or directory >> make[7]: [ex30] Error 1 (ignored) >> /bin/rm -f ex30.o >> 1,123c1 >> >> >> ======================================================================================================================= >> >> >>> [0]PETSC ERROR: --------------------- Error Message >>> ------------------------------------ >>> [0]PETSC ERROR: Object is in wrong state! >>> [0]PETSC ERROR: Need to provide function with DMSetFunction()! >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: Petsc Development HG revision: >>> 1bebacb504435f8e678fe74ff73d827eb94edce3 HG Date: Mon Nov 12 12:26:42 2012 >>> -0700 >>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>> [0]PETSC ERROR: See docs/index.html for manual pages. >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex48 on a arch-gnu named Barrys-MacBook-Pro.local by >>> barrysmith Wed Nov 14 19:21:08 2012 >>> [0]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [0]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: DMComputeFunction() line 2543 in >>> /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c >>> [0]PETSC ERROR: SNESDefaultComputeFunction_DMLegacy() line 644 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c >>> [0]PETSC ERROR: SNESComputeFunction() line 1945 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: SNESSolve_LS() line 162 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c >>> [0]PETSC ERROR: SNESSolve() line 3580 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: main() line 1555 in src/snes/examples/tutorials/ex48.c >>> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >> /Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials >> Possible problem with ex48_2, diffs above >> ========================================= >> >> >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: ./ex48 on a arch-gnu named Barrys-MacBook-Pro.local by >>> barrysmith Wed Nov 14 19:21:12 2012 >>> [0]PETSC ERROR: Libraries linked from >>> /Users/barrysmith/Src/petsc-dev/arch-gnu/lib >>> [0]PETSC ERROR: Configure run at Mon Nov 12 17:05:20 2012 >>> [0]PETSC ERROR: Configure options --download-blacs --download-cmake >>> --download-fftw --download-hypre --download-libyaml --download-metis >>> --download-ml --download-mpich --download-mumps --download-parmetis >>> --download-ptscotch --download-scalapack --download-superlu >>> --download-superlu_dist --download-triangle --download-yaml >>> --with-afterimage --with-ams-dir=/Users/barrysmith/Src/ams-dev --with-java >>> --with-openmp --with-pthreadclasses --with-server --with-shared-libraries >>> PETSC_ARCH=arch-gnu >>> [0]PETSC ERROR: >>> ------------------------------------------------------------------------ >>> [0]PETSC ERROR: DMComputeFunction() line 2543 in >>> /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c >>> [0]PETSC ERROR: SNESDefaultComputeFunction_DMLegacy() line 644 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/utils/dmsnes.c >>> [0]PETSC ERROR: SNESComputeFunction() line 1945 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: SNESSolve_LS() line 162 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c >>> [0]PETSC ERROR: SNESSolve() line 3580 in >>> /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c >>> [0]PETSC ERROR: main() line 1555 in src/snes/examples/tutorials/ex48.c >>> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >>> [cli_0]: aborting job: >>> application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 >> /Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials >> Possible problem with ex48_4, diffs above >>
