I cloned a fresh repo and built from scratch. I'm seeing the same error I previously reported with both intel and gnu compilers. Also, I get warnings in MatSOR_SeqAIJ_Inode during the build.
src/mat/impls/aij/seq/inode.c: In function ‘MatSOR_SeqAIJ_Inode’: src/mat/impls/aij/seq/inode.c:2758: warning: ‘sum2’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2758: warning: ‘sum3’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2758: warning: ‘sum4’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2758: warning: ‘sum5’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2761: warning: ‘v2’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2761: warning: ‘v3’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2761: warning: ‘v4’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2761: warning: ‘v5’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2758: warning: ‘sum1’ may be used uninitialized in this function src/mat/impls/aij/seq/inode.c:2761: warning: ‘v1’ may be used uninitialized in this function John On Mon, Sep 23, 2013 at 6:50 PM, John Mousel <[email protected]> wrote: > Make test ran correctly for both debug and optimized builds. It runs fine > with plain bJacobi/ilu preconditioning. > > > On Monday, September 23, 2013, Matthew Knepley wrote: > >> On Mon, Sep 23, 2013 at 1:14 PM, John Mousel <[email protected]>wrote: >> >>> I just pulled from petsc-dev and I'm now getting the following error. >>> The result from valgrind is pasted below the error message. >>> Any help would be appreciated. >>> >> >> Looks like BLAS errors, but valgrind has a problem with StateIncrease(). >> Jed just changed the size of the >> state counter. Are you sure everything rebuilt correctly? >> >> Matt >> >> >> John >> >> >> [0]PETSC ERROR: PetscMallocValidate: error detected at MatScale_SeqAIJ() >> line 2464 in src/mat/impls/aij/seq/aij.c >> [0]PETSC ERROR: [1]PETSC ERROR: [2]PETSC ERROR: Memory [id=0(48)] at >> address 0x8483450 is corrupted (probably write past end of array) >> [0]PETSC ERROR: Memory originally allocated in >> PetscObjectComposedDataIncreaseReal() line 171 in src/sys/objects/state.c >> PetscMallocValidate: error detected at MatScale_SeqAIJ() line 2464 in >> src/mat/impls/aij/seq/aij.c >> PetscMallocValidate: error detected at MatScale_SeqAIJ() line 2464 in >> src/mat/impls/aij/seq/aij.c >> [2]PETSC ERROR: [1]PETSC ERROR: [0]PETSC ERROR: --------------------- >> Error Message ------------------------------------ >> [0]PETSC ERROR: Memory corruption! >> [0]PETSC ERROR: ! >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: Petsc Development GIT revision: >> b4e904d1358c92c43842a940440f995d2117e40b GIT Date: 2013-09-23 12:36:08 >> +0100 >> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [0]PETSC ERROR: See docs/index.html for manual pages. >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: ../src/CYLINDER_EXE on a gnu-debug named >> wv.iihr.uiowa.edu by jmousel Mon Sep 23 15:07:15 2013 >> [0]PETSC ERROR: Libraries linked from >> /home/jmousel/NumericalLibraries/petsc/gnu-debug/lib >> [0]PETSC ERROR: Configure run at Mon Sep 23 15:04:14 2013 >> [0]PETSC ERROR: Configure options --download-cmake=1 >> --download-f-blas-lapack=1 --download-metis=1 --download-mpich=1 >> --download-parmetis=1 --with-cc=gcc --with-cxx=g++ --with-fc=gfortran >> PETSC_ARCH=gnu-debug >> [0]PETSC ERROR: >> ------------------------------------------------------------------------ >> [0]PETSC ERROR: PetscMallocValidate() line 149 in src/sys/memory/mtr.c >> [0]PETSC ERROR: MatScale_SeqAIJ() line 2464 in src/mat/impls/aij/seq/aij.c >> [0]PETSC ERROR: MatScale() line 4758 in src/mat/interface/matrix.c >> [0]PETSC ERROR: MatScale_MPIAIJ() line 1262 in >> src/mat/impls/aij/mpi/mpiaij.c >> [0]PETSC ERROR: MatScale() line 4758 in src/mat/interface/matrix.c >> [0]PETSC ERROR: MatAYPX() line 279 in src/mat/utils/axpy.c >> [0]PETSC ERROR: PCGAMGOptprol_AGG() line 1331 in >> src/ksp/pc/impls/gamg/agg.c >> [0]PETSC ERROR: PCSetUp_GAMG() line 597 in src/ksp/pc/impls/gamg/gamg.c >> [0]PETSC ERROR: PCSetUp() line 890 in src/ksp/pc/interface/precon.c >> [0]PETSC ERROR: KSPSetUp() line 278 in src/ksp/ksp/interface/itfunc.c >> [0]PETSC ERROR: KSPSolve() line 399 in src/ksp/ksp/interface/itfunc.c >> Memory [id=0(48)] at address 0x8556ca0 is corrupted (probably write past >> end of array) >> [1]PETSC ERROR: Memory originally allocated in >> PetscObjectComposedDataIncreaseReal() line 171 in src/sys/objects/state.c >> [1]PETSC ERROR: Memory [id=0(48)] at address 0x9308690 is corrupted >> (probably write past end of array) >> --------------------- Error Message ------------------------------------ >> [2]PETSC ERROR: Memory originally allocated in >> PetscObjectComposedDataIncreaseReal() line 171 in src/sys/objects/state.c >> [1]PETSC ERROR: Memory corruption! >> [1]PETSC ERROR: ! >> [1]PETSC ERROR: >> ------------------------------------------------------------------------ >> [1]PETSC ERROR: Petsc Development GIT revision: >> b4e904d1358c92c43842a940440f995d2117e40b GIT Date: 2013-09-23 12:36:08 >> +0100 >> [1]PETSC ERROR: See docs/changes/index.html for recent updates. >> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >> [1]PETSC ERROR: See docs/index.html for manual pages. >> [1]PETSC ERROR: >> ------------------------------------------------------------------------ >> [1]PETSC ERROR: ../src/CYLINDER_EXE on a gnu-debug named >> wv.iihr.uiowa.edu by jmousel Mon Sep 23 15:07:15 2013 >> [1]PETSC ERROR: Libraries linked from >> /home/jmousel/NumericalLibraries/petsc/gnu-debug/lib >> [1]PETSC ERROR: Configure run at Mon Sep 23 15:04:14 2013 >> [1]PETSC ERROR: Configure options --download-cmake=1 >> --download-f-blas-lapack=1 --download-metis=1 --download-mpich=1 >> --download-parmetis=1 --with-cc=gcc --with-cxx=g++ --with-fc=gfortran >> PETSC_ARCH=gnu-debug >> [1]PETSC ERROR: >> ------------------------------------------------------------------------ >> [1]PETSC ERROR: PetscMallocValidate() line 149 in src/sys/memory/mtr.c >> [2]PETSC ERROR: --------------------- Error Message >> ------------------------------------ >> [2]PETSC ERROR: Memory corruption! >> [2]PETSC ERROR: ! >> [2]PETSC ERROR: >> ------------------------------------------------------------------------ >> [2]PETSC ERROR: Petsc Development GIT revision: b4e904d1 >> >> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >
