There is no message in configure.log. Looks like you are getting this on the terminal.
It appears to be an icc bug. [bug report to Cray/Intel?] You can try: export MALLOC_CHECK_=0 ./configure ... http://stackoverflow.com/questions/151268/how-to-force-abort-on-glibc-detected-free-invalid-pointer Satish On Tue, 4 Nov 2014, Mark Adams wrote: > I sent it in the previous email. here it is again (it is small). > > On Tue, Nov 4, 2014 at 5:47 PM, Barry Smith <bsm...@mcs.anl.gov> wrote: > > > > > Cool, we need configure.log > > > > > On Nov 4, 2014, at 4:35 PM, Mark Adams <mfad...@lbl.gov> wrote: > > > > > > Additionally I get this output: > > > > > > > > =============================================================================== > > > Configuring PETSc to compile on your system > > > > > =============================================================================== > > > TESTING: checkCCompiler from > > config.setCompilers(config/BuildSystem/config/setCompilers.py:534) > > *** glibc detected *** icc: double free or > > corruption (top): 0x00000000021a2240 *** > > > ======= Backtrace: ========= > > > /lib64/libc.so.6(+0x75e76)[0x2ae7076cce76] > > > /lib64/libc.so.6(+0x789b3)[0x2ae7076cf9b3] > > > /lib64/libc.so.6(fclose+0x14d)[0x2ae7076bd4dd] > > > icc[0x4fc06c] > > > icc[0x4f3177] > > > icc[0x4fc151] > > > icc[0x4fc05e] > > > ..... > > > > > > > > > On Tue, Nov 4, 2014 at 3:59 PM, Mark Adams <mfad...@lbl.gov> wrote: > > > Thanks Victor, > > > > > > I am getting cc error. Any ideas? > > > Mark > > > > > > > > > On Tue, Nov 4, 2014 at 12:38 PM, Victor Eijkhout < > > eijkh...@tacc.utexas.edu> wrote: > > > > > > > On Nov 4, 2014, at 11:32 AM, Mark Adams <mfad...@lbl.gov> wrote: > > > > > > > > Has anyone built PETSc on KNC (Babbage at NERSC to be specific)? > > > > > > At TACC under intel 14: > > > > > > CEE_OPTIONS="-mmic -mkl -fp-model precise" > > > ./configure --PETSC_ARCH=mic --with-fc=0 --with-debug=0 \ > > > --with-batch=1 --CPPFLAGS=-mmic \ > > > --CFLAGS="${CEE_OPTIONS}" --CXXFLAGS="${CEE_OPTIONS}" > > --FFLAGS="${CEE_OPTIONS}" \ > > > --with-mpi=1 --known-mpi-shared-libraries=1 \ > > > --with-mpi-include=${MPICH_HOME}/mic/include \ > > > --with-mpi-lib=${MPICH_HOME}/mic/lib \ > > > --with-mpicc=/opt/apps/intel13/impi/4.1.0.030/intel64/bin/mpicc > > \ > > > --with-mpicxx=/opt/apps/intel13/impi/ > > 4.1.0.030/intel64/bin/mpicxx \ > > > --with-mpif90=/opt/apps/intel13/impi/ > > 4.1.0.030/intel64/bin/mpif90 > > > > > > That first line is still giving me problems. Just nix the fp-model. > > > > > > Victor. > > > > > > > > > > > > > >
