Hi PETSc Experts, I'm compiling a Windows program using petsc-dev, this program previously used petsc-3.1 the only change performed was:
MatCreateMPIBAIJ --> MatCreateBAIJ As the PETSc documentation suggested. I only changed the name of the function. I got to a problem when the program is launched and PETSc is called by the program: [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Argument out of range [0]PETSC ERROR: New nonzero at (0,20) caused a malloc Use MatSetOption(A, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE) to turn off this check [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.6-34-gc9ff9ea GIT Date: 2015-06-17 23:52:21 -0500 [0]PETSC ERROR: F:\prog_win\prog\Debug\prog.exe on a windows-intel named HECTOR-PC by hector Thu Jun 18 18:31:42 2015 [0]PETSC ERROR: Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel --with-parmetis-include=/cygdrive/c/Installed/parmetis/include --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib --with-metis-include=/cygdrive/c/Installed/parmetis/include --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" --with-scalapack-include=/cygdrive/c/Installed/mkl/include --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]" [0]PETSC ERROR: #1 MatSetValues_SeqBAIJ() line 2192 in C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: #2 MatSetValues() line 1175 in C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Argument out of range [0]PETSC ERROR: New nonzero at (1,21) caused a malloc Use MatSetOption(A, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE) to turn off this check [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.6-34-gc9ff9ea GIT Date: 2015-06-17 23:52:21 -0500 [0]PETSC ERROR: F:\prog_win\prog\Debug\prog.exe on a windows-intel named HECTOR-PC by hector Thu Jun 18 18:31:42 2015 [0]PETSC ERROR: Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel --with-parmetis-include=/cygdrive/c/Installed/parmetis/include --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib --with-metis-include=/cygdrive/c/Installed/parmetis/include --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" --with-scalapack-include=/cygdrive/c/Installed/mkl/include --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]" [0]PETSC ERROR: #3 MatSetValues_SeqBAIJ() line 2192 in C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: #4 MatSetValues() line 1175 in C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c . . . [0]PETSC ERROR: #3599 MatSetValues_SeqBAIJ() line 2192 in C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: #3600 MatSetValues() line 1175 in C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: [0] MatSetValues_SeqBAIJ line 2148 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\impls\baij\seq\baij.c [0]PETSC ERROR: [0] MatSetValues line 1142 C:\INSTAL~1\PETSC-~1\PETSC-~1\src\mat\INTERF~1\matrix.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.6-34-gc9ff9ea GIT Date: 2015-06-17 23:52:21 -0500 [0]PETSC ERROR: F:\prog_win\prog\Debug\prog.exe on a windows-intel named HECTOR-PC by hector Fri Jun 19 12:43:06 2015 [0]PETSC ERROR: Configure options --with-cc="win32fe cl" --with-fc="win32fe ifort" --prefix=/cygdrive/c/Installed/petsc/ --PETSC_ARCH=windows-intel --with-parmetis-include=/cygdrive/c/Installed/parmetis/include --with-parmetis-lib=/cygdrive/c/Installed/parmetis/lib/parmetis.lib --with-metis-include=/cygdrive/c/Installed/parmetis/include --with-metis-lib=/cygdrive/c/Installed/parmetis/lib/metis.lib --with-mpi-include="[/cygdrive/c/Installed/msmpi/Include,/cygdrive/c/Installed/msmpi/Include/x64]" --with-mpi-lib="[/cygdrive/c/Installed/msmpi/Lib/x64/msmpi.lib,/cygdrive/c/Installed/msmpi/Lib/x64/msmpifec.lib]" --with-blas-lapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_sequential.lib]" --with-scalapack-include=/cygdrive/c/Installed/mkl/include --with-scalapack-lib="[/cygdrive/c/Installed/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Installed/mkl/lib/intel64/mkl_blacs_msmpi_lp64.lib]" [0]PETSC ERROR: #3601 User provided function() line 0 in unknown file job aborted: [ranks] message [0] application aborted aborting MPI_COMM_WORLD (comm=0x44000000), error 59, comm rank 0 I'm compiling the program on Visual Studio, what could be the problem? Thanks for your help, Hector
