Hi PETSc Experts! I'm compiling petsc-master, configuration and compilation goes ok.
While making the tests to verify the compilation I got an error message, however the report also says the tests were successful. Is the libimf.so warning causing the error message? Here is the output from the test: make PETSC_DIR=/home/hector/dwnld_prog/petsc-master PETSC_ARCH=linux-intel-debug test Running test examples to verify correct installation Using PETSC_DIR=/home/hector/dwnld_prog/petsc-master and PETSC_ARCH=linux-intel-debug *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /home/hector/dwnld_prog/petsc-master/src/snes/examples/tutorials ex19 ********************************************************************************* /home/hector/installed/openmpi-intel/bin/mpicc -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/home/hector/dwnld_prog/petsc-master/include -I/home/hector/dwnld_prog/petsc-master/linux-intel-debug/include -I/home/hector/installed/petsc3.6-intel-debug/include -I/home/hector/installed/zoltan/include -I/home/hector/installed/parmetis/include -I/home/hector/installed/include -I/home/hector/installed/openmpi-intel/include `pwd`/ex19.c /home/hector/installed/openmpi-intel/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -o ex19 ex19.o -L/home/hector/dwnld_prog/petsc-master/linux-intel-debug/lib -lpetsc -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -Wl,-rpath,/home/hector/installed/petsc3.6-intel-debug/lib -L/home/hector/installed/petsc3.6-intel-debug/lib -lHYPRE -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/zoltan/lib -L/home/hector/installed/zoltan/lib -lzoltan -Wl,-rpath,/home/hector/installed/parmetis/lib -L/home/hector/installed/parmetis/lib -lparmetis -lmetis -lX11 -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -lssl -lcrypto -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -limf -lm -lifport -lifcoremt -lsvml -lm -lipgo -lirc -lirc_s -lm -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lrt -lm -lz -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -ldl -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_lp64 -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_core -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_thread -liomp5 -lpthread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmpi -lgcc_s -ldl -Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a /home/hector/mkl_static/libmkl_core.a /home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl -lpthread -lm /share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail /bin/rm -f ex19.o C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI process C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI processes *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /home/hector/dwnld_prog/petsc-master/src/snes/examples/tutorials ex5f ********************************************************* /home/hector/installed/openmpi-intel/bin/mpif90 -c -openmp -openmp-link static -g -I/home/hector/dwnld_prog/petsc-master/include -I/home/hector/dwnld_prog/petsc-master/linux-intel-debug/include -I/home/hector/installed/petsc3.6-intel-debug/include -I/home/hector/installed/zoltan/include -I/home/hector/installed/parmetis/include -I/home/hector/installed/include -I/home/hector/installed/openmpi-intel/include -o ex5f.o ex5f.F /home/hector/installed/openmpi-intel/bin/mpif90 -openmp -openmp-link static -openmp -openmp-link static -g -o ex5f ex5f.o -L/home/hector/dwnld_prog/petsc-master/linux-intel-debug/lib -lpetsc -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -Wl,-rpath,/home/hector/installed/petsc3.6-intel-debug/lib -L/home/hector/installed/petsc3.6-intel-debug/lib -lHYPRE -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -Wl,-rpath,/home/hector/installed/zoltan/lib -L/home/hector/installed/zoltan/lib -lzoltan -Wl,-rpath,/home/hector/installed/parmetis/lib -L/home/hector/installed/parmetis/lib -lparmetis -lmetis -lX11 -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -lssl -lcrypto -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -limf -lm -lifport -lifcoremt -lsvml -lm -lipgo -lirc -lirc_s -lm -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -lmpi_cxx -lstdc++ -lrt -lm -lz -L/home/hector/installed/openmpi-intel/lib -L/home/hector/installed/gcc-5.1/lib/gcc/x86_64-unknown-linux-gnu/5.1.0 -L/home/hector/installed/gcc-5.1/lib64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64 -L/share/apps/intel2/composer_xe_2015.3.187/mkl/lib/intel64 -L/home/hector/installed/gcc-5.1/lib -ldl -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_lp64 -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_core -Wl,-rpath,/home/hector/mkl_static -L/home/hector/mkl_static -lmkl_intel_thread -liomp5 -lpthread -Wl,-rpath,/home/hector/installed/openmpi-intel/lib -lmpi -lgcc_s -ldl -Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a /home/hector/mkl_static/libmkl_core.a /home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl -lpthread -lm /share/apps/intel2/composer_xe_2015.3.187/compiler/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail /bin/rm -f ex5f.o Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI process Completed test examples ========================================= Here is the configuration command I used: ./configure --prefix=/home/hector/installed/petsc3.6-intel-debug --PETSC_DIR=/home/hector/dwnld_prog/petsc-master --PETSC_ARCH=linux-intel-debug --with-mpi-dir=/home/hector/installed/openmpi-intel/ --with-parmetis-dir=/home/hector/installed/parmetis/ --with-metis-dir=/home/hector/installed/parmetis/ --with-zoltan-dir=/home/hector/installed/zoltan/ --download-ptscotch --download-hypre --with-blas-lapack-lib=[/home/hector/mkl_static/libmkl_intel_lp64.a,/home/hector/mkl_static/libmkl_core.a,/home/hector/mkl_static/libmkl_intel_thread.a] --with-scalapack-include=/share/apps/intel2/mkl/include --with-scalapack-lib=[/home/hector/mkl_static/libmkl_scalapack_lp64.a,/home/hector/mkl_static/libmkl_blacs_openmpi_lp64.a] --with-valgrind=1 --with-valgrind-dir=/home/hector/installed --with-shared-libraries=0 --with-fortran-interfaces=1 --FC_LINKER_FLAGS="-openmp -openmp-link static" --FFLAGS="-openmp -openmp-link static" --LIBS="-Wl,--start-group /home/hector/mkl_static/libmkl_intel_lp64.a /home/hector/mkl_static/libmkl_core.a /home/hector/mkl_static/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl -lpthread -lm" Thanks for your help! Hector
