The example runs fine - if I build & run manually. Something else must have caused malloc failure lastnight..
Satish --------- petsc@n-gage:~/petsc.test/src/dm/examples/tests$ env |grep PETSC PETSC_ARCH=arch-opensolaris-cmplx-pkgs-dbg PETSC_DIR=/export/home/petsc/petsc.test petsc@n-gage:~/petsc.test/src/dm/examples/tests$ make ex36 /export/home/petsc/soft/mpich-3.1.3/bin/mpicc -o ex36.o -c -g -I/export/home/petsc/petsc.test/include -I/export/home/petsc/petsc.test/arch-opensolaris-cmplx-pkgs-dbg/include -I/export/home/petsc/soft/mpich-3.1.3/include `pwd`/ex36.c /export/home/petsc/soft/mpich-3.1.3/bin/mpicc -g -o ex36 ex36.o -R/export/home/petsc/petsc.test/arch-opensolaris-cmplx-pkgs-dbg/lib -L/export/home/petsc/petsc.test/arch-opensolaris-cmplx-pkgs-dbg/lib -lpetsc -R/export/home/petsc/petsc.test/arch-opensolaris-cmplx-pkgs-dbg/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lflapack -lfblas -lparmetis -lmetis -lssl -lcrypto -ltriangle -lX11 -lm -R/export/home/petsc/soft/mpich-3.1.3/lib -L/export/home/petsc/soft/mpich-3.1.3/lib -lmpifort -R/opt/SUNWspro/lib -L/opt/SUNWspro/lib -R/opt/SUNWspro/prod/lib -L/opt/SUNWspro/prod/lib -R/usr/ccs/lib -L/usr/ccs/lib -lfui -lfai -lfsu -lsunmath -lmtsk -lm -ldl -lmpicxx -lmpi -R/opt/SUNWspro/lib/rw7:/opt/SUNWspro/lib:/usr/ccs/lib:/lib:/usr/lib -lCstd -lCrun -ldl -lsocket -lnsl /usr/bin/rm -f -f ex36.o petsc@n-gage:~/petsc.test/src/dm/examples/tests$ make runex36_2dp1 petsc@n-gage:~/petsc.test/src/dm/examples/tests$ make runex36_2dp1 petsc@n-gage:~/petsc.test/src/dm/examples/tests$ make runex36_2dp1 petsc@n-gage:~/petsc.test/src/dm/examples/tests$ On Fri, 30 Oct 2015, Satish Balay wrote: > Hm - the error below is from wii (freebsd). But I don't see that in tonights > builds. > > The opensolaris issues looks different [out of memory]. Thats wierd. > > I'll check if I can reproduce.. > > Satish > > On Fri, 30 Oct 2015, Barry Smith wrote: > > > > > The log file is > > http://ftp.mcs.anl.gov/pub/petsc/nightlylogs/archive/2015/10/30/examples_next_arch-opensolaris-cmplx-pkgs-dbg_n-gage.log > > > > hence the machine name is n-gage and the PETSC_ARCH is > > arch-opensolaris-cmplx-pkgs-dbg > > > > > > > On Oct 30, 2015, at 2:49 PM, Matthew Knepley <[email protected]> wrote: > > > > > > Cool. Which machine had the error you sent. I can't find it. > > > > > > Matt > > > > > > On Oct 30, 2015 2:47 PM, "Barry Smith" <[email protected]> wrote: > > > > > > Satish can provide more details on how you can easily run in the EXACT > > > environment where something broke to debug it much faster. The model is > > > > > > 1) ssh [email protected] > > > > > > 2) ssh testmachine (testmachine is always the end part of the name of > > > the log file) > > > > > > 3) cd to either /sandbox/petsc/petsc.test or /home/petsc/petsc.test > > > depending on the machine > > > > > > 4) git fetch > > > > > > 5) git checkout the broken branch > > > > > > 6) set PETSC_ARCH=arch of broken machine, this is in the name of the log > > > filename > > > > > > 7) ./config/examples/${PETSC_ARCH}.py > > > > > > 8) build PETSc and debug away. > > > > > > If you have any trouble with this let Satish and I know. It is the > > > intention that debugging on the test machines should be very > > > straightforward and not require getting help from anyone or following > > > convoluted instructions. > > > > > > Barry > > > > > > > On Oct 30, 2015, at 2:15 PM, Matthew Knepley <[email protected]> wrote: > > > > > > > > I ran it through valgrind on my machine with no problems. Checking logs > > > > > > > > Matt > > > > > > > > On Thu, Oct 29, 2015 at 5:09 PM, Barry Smith <[email protected]> wrote: > > > > > > > > < [3] Roots referenced by my leaves, by rank > > > > < Symmetric gradient null space: PASS > > > > < Function tests pass for order 0 at tolerance 1e-10 > > > > < Function tests pass for order 0 derivatives at tolerance 1e-10 > > > > --- > > > > > [2]PETSC ERROR: #1 PetscCommDuplicate() line 178 in > > > > > /usr/home/balay/petsc.clone-3/src/sys/objects/tagm.c > > > > > [2]PETSC ERROR: #2 PetscHeaderCreate_Private() line 60 in > > > > > /usr/home/balay/petsc.clone-3/src/sys/objects/inherit.c > > > > > [2]PETSC ERROR: #3 PetscSFCreate() line 44 in > > > > > /usr/home/balay/petsc.clone-3/src/vec/is/sf/interface/sf.c > > > > > [2]PETSC ERROR: #4 DMPlexDistribute() line 1562 in > > > > > /usr/home/balay/petsc.clone-3/src/dm/impls/plex/plexdistribute.c > > > > > [2]PETSC ERROR: #5 CreateMesh() line 232 in > > > > > /usr/home/balay/petsc.clone-3/src/dm/impls/plex/examples/tests/ex3.c > > > > > [2]PETSC ERROR: #6 main() line 911 in > > > > > /usr/home/balay/petsc.clone-3/src/dm/impls/plex/examples/tests/ex3.c > > > > > [2]PETSC ERROR: PETSc Option Table entries: > > > > > [2]PETSC ERROR: -dim 3 > > > > > [2]PETSC ERROR: -dm_plex_max_projection_height 2 > > > > > [2]PETSC ERROR: -dm_view ascii::ASCII_INFO_DETAIL > > > > > [2]PETSC ERROR: -malloc_dump > > > > > [2]PETSC ERROR: -nox > > > > > [2]PETSC ERROR: -nox_warning > > > > > [2]PETSC ERROR: -num_comp 3 > > > > > [2]PETSC ERROR: -petscpartitioner_type simple > > > > > [2]PETSC ERROR: -petscspace_order 1 > > > > > [2]PETSC ERROR: -petscspace_poly_tensor > > > > > [2]PETSC ERROR: -qorder 1 > > > > > [2]PETSC ERROR: -simplex 0 > > > > > [2]PETSC ERROR: -test_fe_jacobian > > > > > [2]PETSC ERROR: -tree > > > > > [2]PETSC ERROR: ----------------End of Error Message -------send > > > > > entire error message to [email protected] > > > > > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2 > > > > > [cli_2]: aborting job: > > > > > application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2 > > > > > > > > > > =================================================================================== > > > > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > > > > > = PID 15231 RUNNING AT wii > > > > > = EXIT CODE: 1 > > > > > = CLEANING UP REMAINING PROCESSES > > > > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > > > > > =================================================================================== > > > > /usr/home/balay/petsc.clone-3/src/dm/impls/plex/examples/tests > > > > Possible problem with with runex3_nonconforming_tensor_3, diffs above > > > > > > > > > > > > > > > > > > > > -- > > > > What most experimenters take for granted before they begin their > > > > experiments is infinitely more interesting than any results to which > > > > their experiments lead. > > > > -- Norbert Wiener > > > > > > > > >
