On Sun, Feb 28, 2016 at 3:12 PM, Barry Smith <[email protected]> wrote:
> > Satish, > > Yeah, hypre totally botched its implementation of a way to check for > the blas/lapack libraries. I've iterated with them several times on the > basic problem but they keep patching what they do, rather then discard all > their incorrect code and handle it simply as they should. I'm sure it would have worked if they had used CMake ;) Matt > > Barry > > > On Feb 28, 2016, at 3:00 PM, Satish Balay <[email protected]> wrote: > > > > Executing: cd > /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/arch-linux2-c-debug/externalpackages/git.hypre/src > && ./configure --prefix=/opt/petsc-master_debug MAKE=/bin/gmake > --libdir=/opt/petsc-master_debug/lib CC="/opt/openmpi-1.10.2/bin/mpicc" > CFLAGS="-fPIC -g3" CXX="/opt/openmpi-1.10.2/bin/mpicxx" CXXFLAGS="-g -fPIC" > F90="/opt/openmpi-1.10.2/bin/mpif90" F90FLAGS="-fPIC -ffree-line-length-0 > -g" F77="/opt/openmpi-1.10.2/bin/mpif90" FFLAGS="-fPIC -ffree-line-length-0 > -g" FC="/opt/openmpi-1.10.2/bin/mpif90" FCFLAGS="-fPIC -ffree-line-length-0 > -g" --with-MPI-include="/opt/openmpi-1.10.2/include" --with-MPI-lib-dirs="" > --with-MPI-libs="" > --with-blas-lib="-Wl,-rpath,/opt/intel/composerxe/mkl/lib/intel64 > -L/opt/intel/composerxe/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core > -lmkl_intel_thread -liomp5 -ldl -lpthread -lm > -Wl,-rpath,/opt/openmpi-1.10.2/lib -L/opt/openmpi-1.10.2/lib > -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/compiler/lib/intel64 > -L/opt/intel/composer_xe_2015.2.164/compiler/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/ipp/lib/intel64 > -L/opt/intel/composer_xe_2015.2.164/ipp/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 > -L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/tbb/lib/intel64/gcc4.4 > -L/opt/intel/composer_xe_2015.2.164/tbb/lib/intel64/gcc4.4 -lmpi_usempi > -lmpi_mpifh -lgfortran -lm -Wl,-rpath,/opt/openmpi-1.10.2/lib > -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/compiler/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/ipp/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/tbb/lib/intel64/gcc4.4 > -lgfortran -lm -lquadmath -lm" --with-lapack-lib=" " --with-blas=no > --with-lapack=no --with-fmangle-blas=one-underscore > --with-fmangle-lapack=one-underscore --without-mli --without-fei > --without-superlu AR="/bin/ar cr" > > > > checking for dgemm_ in -lm... no > > checking for dgemm_ in -lquadmath... no > > checking for dgemm_ in -lm... (cached) no > > checking for dgemm_ in -lgfortran... no > > checking for dgemm_ in -linux/4.8.5... no > > checking for dgemm_ in -lm... (cached) no > > checking for dgemm_ in -lgfortran... (cached) no > > checking for dgemm_ in -lmpi_mpifh... no > > checking for dgemm_ in -lmpi_usempi... no > > checking for dgemm_ in -linux/4.8.5... (cached) no > > checking for dgemm_ in -lm... (cached) no > > checking for dgemm_ in -lpthread... no > > checking for dgemm_ in -ldl... no > > checking for dgemm_ in -liomp5... no > > checking for dgemm_ in -lmkl_intel_thread... no > > checking for dgemm_ in -lmkl_core... no > > checking for dgemm_ in -lmkl_intel_lp64... noconfigure: error: > **************** Non-linkable blas library error: > *************************** > > User set BLAS library path using either --with-blas-lib=<lib>, or > > --with-blas-libs=<blas_lib_base_name> and > --with-blas_dirs=<path-to-blas-lib>, > > but -L/opt/intel/composer_xe_2015.2.164/tbb/lib/intel64/gcc4.4 > -L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 > -L/opt/intel/composer_xe_2015.2.164/ipp/lib/intel64 > -L/opt/intel/composer_xe_2015.2.164/compiler/lib/intel64 > -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/opt/openmpi-1.10.2/lib > -L/opt/intel/composerxe/mkl/lib/intel64 -lm -lquadmath -lm -lgfortran > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/tbb/lib/intel64/gcc4.4 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/ipp/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/compiler/lib/intel64 > -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -Wl,-rpath,/opt/openmpi-1.10.2/lib -lm -lgfortran -lmpi_mpifh -lmpi_usempi > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/tbb/lib/intel64/gcc4.4 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/ipp/lib/intel64 > -Wl,-rpath,/opt/intel/composer_xe_2015.2.164/compiler/lib/intel64 > -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 > -Wl,-rpath,/opt/openmpi-1.10.2/lib -lm -lpthread -ldl -liomp5 > -lmkl_intel_thread -lmkl_core -lmkl_intel_lp64 > -Wl,-rpath,/opt/intel/composerxe/mkl/lib/intel64 provided cannot be used. > See "configure --help" for usage details. > > > ***************************************************************************************** > > > ******************************************************************************* > > > > > > Hm - instead of using all the libs from --with-blas-libs in a single > > link command - hypre is checking one '-llibrary' form this list at a > > time? [including -linux/4.8.5 which is from a -L option] > > > > > > '-lm -lpthread -ldl -liomp5 -lmkl_intel_thread -lmkl_core > -lmkl_intel_lp64' ? > > > > Is hypre configure reversing the arguments it got? Its changed from > > > > --with-blas-lib='... -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread > -liomp5 -ldl -lpthread -lm ...' > > > > I can reproduce this issue locally with: > > > > ./configure --download-hypre PETSC_ARCH=arch-hypre > --with-blas-lapack-dir=/soft/com/packages/intel/15/update3/mkl > --with-sowing=0 > > > > Satish > > > > On Sun, 28 Feb 2016, Eric Chamberland wrote: > > > >> Hi Barry, > >> > >> the configuration of hypre looks broken since last night...? > >> > >> Here is the log issued from our automatic compilation of > petsc-master.tar.gz > >> at 2016-02-28 02h00: > >> > >> > http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/configure_20160228_0200.log > >> > >> Everything was fine until last night... > >> > >> Thanks, > >> > >> Eric > >> > >> Le 2016-02-27 15:36, Barry Smith a écrit : > >>> PETSc Users, > >>> > >>> We are planning the PETSc release 3.7 shortly. If you know of any > bugs > >>> that need to be fixed or enhancements added before the release > please > >>> let us know. > >>> > >>> You can think of the master branch of the PETSc repository > obtainable > >>> with > >>> > >>> git clone https://bitbucket.org/petsc/petsc petsc > >>> > >>> as a release candidate for 3.7. Changes for the release are listed at > >>> http://www.mcs.anl.gov/petsc/documentation/changes/dev.html > >>> > >>> Thanks > >>> > >>> Barry > >>> > >> > >> > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener
