Are you on master? If so can you try with latest? or use these patches. https://bitbucket.org/petsc/petsc/commits/d742c75fd0d514f7fa1873d5b10984bc3f363031 https://bitbucket.org/petsc/petsc/commits/952da9c592908439a79849c624703c9c85ef4977 And see if you still encounter problems.
Satish On Tue, 10 Jan 2017, Mark Adams wrote: > We have a code that is failing on large scale runs on Edison at NERSC. We > ran with a debug version and we got this error message that I assume is > from a check that is done in debug. Is this a false positive? This is a 64 > bit integer build. > Thanks, > Mark > > [5]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [5]PETSC ERROR: Argument out of range > [5]PETSC ERROR: A really huge hash is being requested.. cannot process: > 4294967296 > [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [5]PETSC ERROR: Petsc Development GIT revision: v3.7.4-2584-g7175242 GIT > Date: 2016-12-21 13:19:16 -0600 > [5]PETSC ERROR: /tmp/targetExec on a arch-xc30-dbg64-intel named nid00008 > by u6338 Sat Jan 7 16:39:16 2017 > [5]PETSC ERROR: Configure options --COPTFLAGS="-O0 -g -no-ipo" > --CXXOPTFLAGS="-O0 -g -no-ipo" --FOPTFLAGS="-O0 -g -ipo" > --download-parmetis --download-metis --download-hypre --with-ssl=0 > --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC > --with-cxxlib-autodetect=0 --with-debugging=1 --with-fc=ftn > --with-fortranlib-autodetect=0 --with-shared-libraries=0 --with-x=0 > --with-mpiexec=srun LIBS=-lstdc++ --with-64-bit-indices > --prefix=/global/homes/m/madams/petsc_install/petscv3.7-x[16527]PETSC > ERROR: ---- > > using: > PETSC_DIR=/global/homes/m/madams/petsc_install/petscv3.7-xc30-dbg64-intel/ > > maybe go back to opt version? > > > On 12/22/2016 03:22 PM, Mark Adams wrote: > > > You configure with the size of an integer explicitly, ie, > > --with-64-bit-integers. I can't imagine there is anything bigger, but it > > would not be hard to do. > > > > On Thu, Dec 22, 2016 at 6:06 PM, David Trebotich <[email protected]> > > wrote: > > > > i just committed changes to SPMD that Brian needed for signed long long. > >> Evidently petsc is now handling bigger matrices? > >> > >> > >> On 12/22/2016 2:57 PM, Mark Adams wrote: > >> > >> There are a few hits on stack exchange, google: > >> > >> "error: expression must have class type" > >> > >> I think intputT is a templated type and it is templated with a PetscInt. > >> You are calling the linearSize() method on a primitive type. That is my > >> best guess. > >> > >> On Thu, Dec 22, 2016 at 3:33 PM, David Trebotich <[email protected]> > >> wrote: > >> > >> building with dbg looks same: > >>> > >>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(23): error: expression must > >>> have class type > >>> return inputT.linearSize(); > >>> ^ > >>> detected during: > >>> instantiation of "int linearSize(const T &) [with > >>> T=PetscInt={PetscInt64={long long}}]" at line 128 of > >>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H" > >>> instantiation of "int MiniIVFAB<T>::size(const Box &, const > >>> Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at line 155 > >>> of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H" > >>> instantiation of "int BaseEBCellFAB<T>::size(const Box &, > >>> const Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at > >>> line > >>> 149 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H" > >>> instantiation of "int LDOperator<T>::size(const T &, const > >>> Box &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets > >>> cInt64={long > >>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> implicit generation of "LDOperator<T>::LDOperator() [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> instantiation of class "LDOperator<T> [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> instantiation of "void LevelData<T>::copyTo(const Interval &, > >>> BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T> > >>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at > >>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>> instantiation of "void LevelData<T>::copyTo(const Interval &, > >>> BoxLayoutData<T> &, const Interval &) const [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 of > >>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>> instantiation of "LevelData<T>::LevelData() [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 of > >>> "../srcLib/EBPetscSolver.cpp" > >>> > >>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(35): error: expression must > >>> have class type > >>> inputT.linearOut(a_outBuf); > >>> ^ > >>> detected during: > >>> instantiation of "void linearOut(void *, const T &) [with > >>> T=PetscInt={PetscInt64={long long}}]" at line 155 of > >>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H" > >>> instantiation of "void MiniIVFAB<T>::linearOut(void *, const > >>> Box &, const Interval &) const [with T=PetscInt={PetscInt64={long > >>> long}}]" > >>> at line 169 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H" > >>> instantiation of "void BaseEBCellFAB<T>::linearOut(void *, > >>> const Box &, const Interval &) const [with T=PetscInt={PetscInt64={long > >>> long}}]" at line 154 of "../../../Chombo/lib/src/BoxTo > >>> ols/BoxLayoutData.H" > >>> instantiation of "void LDOperator<T>::linearOut(const T &, > >>> void *, const Box &, const Interval &) const [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> implicit generation of "LDOperator<T>::LDOperator() [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> instantiation of class "LDOperator<T> [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> instantiation of "void LevelData<T>::copyTo(const Interval &, > >>> BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T> > >>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at > >>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>> instantiation of "void LevelData<T>::copyTo(const Interval &, > >>> BoxLayoutData<T> &, const Interval &) const [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 of > >>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>> instantiation of "LevelData<T>::LevelData() [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 of > >>> "../srcLib/EBPetscSolver.cpp" > >>> > >>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(29): error: expression must > >>> have class type > >>> a_outputT.linearIn(inBuf); > >>> ^ > >>> detected during: > >>> instantiation of "void linearIn(T &, const void *) [with > >>> T=PetscInt={PetscInt64={long long}}]" at line 181 of > >>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H" > >>> instantiation of "void MiniIVFAB<T>::linearIn(void *, const > >>> Box &, const Interval &) [with T=PetscInt={PetscInt64={long long}}]" at > >>> line 181 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H" > >>> instantiation of "void BaseEBCellFAB<T>::linearIn(void *, > >>> const Box &, const Interval &) [with T=PetscInt={PetscInt64={long > >>> long}}]" > >>> at line 159 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H" > >>> instantiation of "void LDOperator<T>::linearIn(T &, void *, > >>> const Box &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets > >>> cInt64={long > >>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> implicit generation of "LDOperator<T>::LDOperator() [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> instantiation of class "LDOperator<T> [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 of > >>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>> instantiation of "void LevelData<T>::copyTo(const Interval &, > >>> BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T> > >>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at > >>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>> instantiation of "void LevelData<T>::copyTo(const Interval &, > >>> BoxLayoutData<T> &, const Interval &) const [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 of > >>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>> instantiation of "LevelData<T>::LevelData() [with > >>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 of > >>> "../srcLib/EBPetscSolver.cpp" > >>> > >>> compilation aborted for ../srcLib/EBPetscSolver.cpp (code 2) > >>> gmake[1]: *** [o/3d.Linux.64.CC.ftn.DEBUG.MPI.PETSC/EBPetscSolver.o] > >>> Error 2 > >>> > >>> > >>> On 12/22/2016 09:42 AM, Mark Adams wrote: > >>> > >>> I have build a debug version (opt64 --> dbg64). You might try that. > >>>> > >>>> On Wed, Dec 21, 2016 at 9:46 PM, Mark Adams <[email protected]> wrote: > >>>> > >>>> > >>>> > >>>>> On Wed, Dec 21, 2016 at 2:25 PM, David Trebotich <[email protected]> > >>>>> wrote: > >>>>> > >>>>> This wasn't happening until after you rebuilt petsc. So I am wondering > >>>>> > >>>>>> if you upgraded or changed something?? > >>>>>> > >>>>>> > >>>>> > >>>>> Humm, let me rebuild. This is on Edison I assume. > >>>>> > >>>>> Try PETSC_DIR=/global/homes/m/madams/petsc_install/petscv3.7-xc3 > >>>>> 0-opt64-intel > >>>>> (again) > >>>>> > >>>>> This is a new build. I would also do a deep clean on your end, of > >>>>> course. > >>>>> > >>>>> I see a DCH_USE_COMPLEX ... > >>>>> > >>>>> Also, I would try a debug build just to get some data. This is some > >>>>> strange problem of something is out of synch. > >>>>> > >>>>> > >>>>> > >>>>> On 12/19/2016 05:05 PM, Mark Adams wrote: > >>>>>> > >>>>>> On Mon, Dec 19, 2016 at 6:35 PM, David Trebotich <[email protected]> > >>>>>> > >>>>>>> wrote: > >>>>>>> > >>>>>>> I am sorry, you mean I need to add that to environment variables? > >>>>>>> > >>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>> The PETSC_ARCH is hardwired for the size of integers so you would use > >>>>>>> PETSC_ARCH=arch-xc30-opt-intel to get 32 bit ints (I don't know of > >>>>>>> this > >>>>>>> installation ever being used). But now that I think about it you > >>>>>>> always > >>>>>>> use > >>>>>>> 64 bit ints and you need to. > >>>>>>> > >>>>>>> So what is going on here ... it looks like an object has been > >>>>>>> templated > >>>>>>> on > >>>>>>> a PetscInt and is getting mixed up. I don't think you ever use 32 bit > >>>>>>> ints > >>>>>>> in PETSc so it looks like you regressed here... I don't have a lot of > >>>>>>> experience with templates. I'd ask Brian or Dan. > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> On 12/19/2016 03:34 PM, Mark Adams wrote: > >>>>>>>> > >>>>>>>> There is a: arch-xc30-opt-intel > >>>>>>>> > >>>>>>>> > >>>>>>>>> On Mon, Dec 19, 2016 at 6:25 PM, David Trebotich < > >>>>>>>>> [email protected]> > >>>>>>>>> wrote: > >>>>>>>>> > >>>>>>>>> Hey Mark- > >>>>>>>>> > >>>>>>>>> We have had this issue recently and am wondering if you know what > >>>>>>>>> > >>>>>>>>>> the > >>>>>>>>>> problem is. Maybe an int vs. PetscInt vs. PetscInt64 kind of > >>>>>>>>>> thing? > >>>>>>>>>> > >>>>>>>>>> CC -O2 -fast -no-ipo -std=c++11 -O3 -m64 > >>>>>>>>>> -qopt-multi-version-aggressive > >>>>>>>>>> -restrict -m64 -std=c++11 -Wno-unknown-pragmas -diag-disable 3180 > >>>>>>>>>> -DCH_SPACEDIM=3 -DCH_Linux -DNDEBUG -DCH_MPI > >>>>>>>>>> -DMPICH_SKIP_MPICXX > >>>>>>>>>> -ULAM_WANT_MPI2CPP -DMPI_NO_CPPBIND -DCH_USE_COMPLEX > >>>>>>>>>> -DCH_USE_EB > >>>>>>>>>> -DCH_USE_MEMORY_TRACKING -DCH_USE_64 -DCH_USE_DOUBLE > >>>>>>>>>> -DCH_USE_HDF5 > >>>>>>>>>> -I/opt/cray/hdf5-parallel/1.8.16/INTEL/15.0/include -I. > >>>>>>>>>> -I../srcBCG > >>>>>>>>>> -I../srcLib -I../srcAdvectDiffuseCrunch_BCG > >>>>>>>>>> -I../srcCrunchFlow_BCG > >>>>>>>>>> -I../srcCrunchFlow_BCG/modules -DCH_USE_PETSC > >>>>>>>>>> -I/global/homes/m/madams/petsc_install/petscv3.6-xc30-opt64- > >>>>>>>>>> intel/include > >>>>>>>>>> -I/global/homes/m/madams/petsc_install/petscv3.6-xc30-opt64- > >>>>>>>>>> intel/include > >>>>>>>>>> -I/global/homes/m/madams/petsc_install/petscv3.6-xc30-opt64- > >>>>>>>>>> intel/include > >>>>>>>>>> -DCH_FORT_UNDERSCORE -I../../../Chombo/lib/src/EBAMRTimeDependent > >>>>>>>>>> -I../../../Chombo/lib/src/EBAMRElliptic > >>>>>>>>>> -I../../../Chombo/lib/src/EBAM > >>>>>>>>>> RTools > >>>>>>>>>> -I../../../Chombo/lib/src/Workshop -I../../../Chombo/lib/src/EBTo > >>>>>>>>>> ols > >>>>>>>>>> -I../../../Chombo/lib/src/AMRTimeDependent > >>>>>>>>>> -I../../../Chombo/lib/src/AMRElliptic > >>>>>>>>>> -I../../../Chombo/lib/src/AMRTools -I../../../Chombo/lib/src/BoxT > >>>>>>>>>> ools > >>>>>>>>>> -I../../../Chombo/lib/src/BaseTools -DCH_LANG_CC -c > >>>>>>>>>> ../srcLib/EBPetscSolver.cpp -o o/3d.Linux.64.CC.ftn.OPTHIGH.M > >>>>>>>>>> PI.PETSC/EBPetscSolver.o > >>>>>>>>>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(23): error: expression > >>>>>>>>>> must > >>>>>>>>>> have class type > >>>>>>>>>> return inputT.linearSize(); > >>>>>>>>>> ^ > >>>>>>>>>> detected during: > >>>>>>>>>> instantiation of "int linearSize(const T &) [with > >>>>>>>>>> T=PetscInt={PetscInt64={long long}}]" at line 128 of > >>>>>>>>>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H" > >>>>>>>>>> instantiation of "int MiniIVFAB<T>::size(const Box &, > >>>>>>>>>> const > >>>>>>>>>> Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at > >>>>>>>>>> line > >>>>>>>>>> 155 > >>>>>>>>>> of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H" > >>>>>>>>>> instantiation of "int BaseEBCellFAB<T>::size(const Box > >>>>>>>>>> &, > >>>>>>>>>> const Interval &) const [with T=PetscInt={PetscInt64={long > >>>>>>>>>> long}}]" at > >>>>>>>>>> line > >>>>>>>>>> 149 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H" > >>>>>>>>>> instantiation of "int LDOperator<T>::size(const T &, > >>>>>>>>>> const > >>>>>>>>>> Box > >>>>>>>>>> &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets > >>>>>>>>>> cInt64={long > >>>>>>>>>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo > >>>>>>>>>> ols/LevelData.H" > >>>>>>>>>> implicit generation of "LDOperator<T>::LDOperator() > >>>>>>>>>> [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> instantiation of class "LDOperator<T> [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const > >>>>>>>>>> Interval &, > >>>>>>>>>> BoxLayoutData<T> &, const Interval &, const Copier &, const > >>>>>>>>>> LDOperator<T> > >>>>>>>>>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long > >>>>>>>>>> long}}>]" > >>>>>>>>>> at > >>>>>>>>>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const > >>>>>>>>>> Interval &, > >>>>>>>>>> BoxLayoutData<T> &, const Interval &) const [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>>>>>>>>> instantiation of "LevelData<T>::LevelData() [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 > >>>>>>>>>> of > >>>>>>>>>> "../srcLib/EBPetscSolver.cpp" > >>>>>>>>>> > >>>>>>>>>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(35): error: expression > >>>>>>>>>> must > >>>>>>>>>> have class type > >>>>>>>>>> inputT.linearOut(a_outBuf); > >>>>>>>>>> ^ > >>>>>>>>>> detected during: > >>>>>>>>>> instantiation of "void linearOut(void *, const T &) > >>>>>>>>>> [with > >>>>>>>>>> T=PetscInt={PetscInt64={long long}}]" at line 155 of > >>>>>>>>>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H" > >>>>>>>>>> instantiation of "void MiniIVFAB<T>::linearOut(void *, > >>>>>>>>>> const > >>>>>>>>>> Box &, const Interval &) const [with T=PetscInt={PetscInt64={long > >>>>>>>>>> long}}]" > >>>>>>>>>> at line 169 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H" > >>>>>>>>>> instantiation of "void BaseEBCellFAB<T>::linearOut(vo > >>>>>>>>>> id > >>>>>>>>>> *, > >>>>>>>>>> const Box &, const Interval &) const [with > >>>>>>>>>> T=PetscInt={PetscInt64={long > >>>>>>>>>> long}}]" at line 154 of "../../../Chombo/lib/src/BoxTo > >>>>>>>>>> ols/BoxLayoutData.H" > >>>>>>>>>> instantiation of "void LDOperator<T>::linearOut(const > >>>>>>>>>> T &, > >>>>>>>>>> void *, const Box &, const Interval &) const [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> implicit generation of "LDOperator<T>::LDOperator() > >>>>>>>>>> [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> instantiation of class "LDOperator<T> [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const > >>>>>>>>>> Interval &, > >>>>>>>>>> BoxLayoutData<T> &, const Interval &, const Copier &, const > >>>>>>>>>> LDOperator<T> > >>>>>>>>>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long > >>>>>>>>>> long}}>]" > >>>>>>>>>> at > >>>>>>>>>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const > >>>>>>>>>> Interval &, > >>>>>>>>>> BoxLayoutData<T> &, const Interval &) const [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>>>>>>>>> instantiation of "LevelData<T>::LevelData() [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 > >>>>>>>>>> of > >>>>>>>>>> "../srcLib/EBPetscSolver.cpp" > >>>>>>>>>> > >>>>>>>>>> ../../../Chombo/lib/src/BaseTools/SPMDI.H(29): error: expression > >>>>>>>>>> must > >>>>>>>>>> have class type > >>>>>>>>>> a_outputT.linearIn(inBuf); > >>>>>>>>>> ^ > >>>>>>>>>> detected during: > >>>>>>>>>> instantiation of "void linearIn(T &, const void *) > >>>>>>>>>> [with > >>>>>>>>>> T=PetscInt={PetscInt64={long long}}]" at line 181 of > >>>>>>>>>> "../../../Chombo/lib/src/EBTools/MiniIVFABI.H" > >>>>>>>>>> instantiation of "void MiniIVFAB<T>::linearIn(void *, > >>>>>>>>>> const > >>>>>>>>>> Box &, const Interval &) [with T=PetscInt={PetscInt64={long > >>>>>>>>>> long}}]" > >>>>>>>>>> at > >>>>>>>>>> line 181 of "../../../Chombo/lib/src/EBTools/BaseEBCellFABI.H" > >>>>>>>>>> instantiation of "void BaseEBCellFAB<T>::linearIn(voi > >>>>>>>>>> d > >>>>>>>>>> *, > >>>>>>>>>> const Box &, const Interval &) [with T=PetscInt={PetscInt64={long > >>>>>>>>>> long}}]" > >>>>>>>>>> at line 159 of "../../../Chombo/lib/src/BoxTools/BoxLayoutData.H" > >>>>>>>>>> instantiation of "void LDOperator<T>::linearIn(T &, > >>>>>>>>>> void > >>>>>>>>>> *, > >>>>>>>>>> const Box &, const Interval &) const [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={Pets > >>>>>>>>>> cInt64={long > >>>>>>>>>> long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo > >>>>>>>>>> ols/LevelData.H" > >>>>>>>>>> implicit generation of "LDOperator<T>::LDOperator() > >>>>>>>>>> [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> instantiation of class "LDOperator<T> [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 114 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelData.H" > >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const > >>>>>>>>>> Interval &, > >>>>>>>>>> BoxLayoutData<T> &, const Interval &, const Copier &, const > >>>>>>>>>> LDOperator<T> > >>>>>>>>>> &) const [with T=BaseEBCellFAB<PetscInt={PetscInt64={long > >>>>>>>>>> long}}>]" > >>>>>>>>>> at > >>>>>>>>>> line 213 of "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>>>>>>>>> instantiation of "void LevelData<T>::copyTo(const > >>>>>>>>>> Interval &, > >>>>>>>>>> BoxLayoutData<T> &, const Interval &) const [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 32 > >>>>>>>>>> of > >>>>>>>>>> "../../../Chombo/lib/src/BoxTools/LevelDataI.H" > >>>>>>>>>> instantiation of "LevelData<T>::LevelData() [with > >>>>>>>>>> T=BaseEBCellFAB<PetscInt={PetscInt64={long long}}>]" at line 41 > >>>>>>>>>> of > >>>>>>>>>> "../srcLib/EBPetscSolver.cpp" > >>>>>>>>>> > >>>>>>>>>> compilation aborted for ../srcLib/EBPetscSolver.cpp (code 2) > >>>>>>>>>> gmake[1]: *** [o/3d.Linux.64.CC.ftn.OPTHIGH. > >>>>>>>>>> MPI.PETSC/EBPetscSolver.o] > >>>>>>>>>> Error 2 > >>>>>>>>>> make: *** [all-example] Error 2 > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> On 12/19/2016 03:09 PM, Mark Adams wrote: > >>>>>>>>>> > >>>>>>>>>> Sorry cleaning up. insert "petsc_install" in the path: "...madams/ > >>>>>>>>>> > >>>>>>>>>> petsc_install/petscv3.6..." > >>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> On Mon, Dec 19, 2016 at 5:43 PM, David Trebotich < > >>>>>>>>>>> [email protected] > >>>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>>> wrote: > >>>>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> Hey Mark- > >>>>>>>>>>> > >>>>>>>>>>> > >>>>>>>>>>> I seem to have lost contact with petsc over the weekend: > >>>>>>>>>>> > >>>>>>>>>>>> /global/homes/m/madams/petscv3.6-xc30-opt64-intel//lib/ > >>>>>>>>>>>> petsc/conf/variables: > >>>>>>>>>>>> No such file or directory > >>>>>>>>>>>> Last chance .ex rule for target /global/homes/m/madams/petscv3 > >>>>>>>>>>>> .6-xc30-opt64-intel//lib/petsc/conf/variables > >>>>>>>>>>>> > >>>>>>>>>>>> setenv | grep petsc: > >>>>>>>>>>>> PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/petsc/3. > >>>>>>>>>>>> 7.2.0/real/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_ > >>>>>>>>>>>> DEFAULT_TARGET@/lib/pkgconfig > >>>>>>>>>>>> PETSC_DIR=/global/homes/m/madams/petscv3.6-xc30-opt64-intel/ > >>>>>>>>>>>> > >>>>>>>>>>>> > >>>>>>>>>>>> Currently Loaded Modulefiles: > >>>>>>>>>>>> 1) modules/3.2.10.4 8) intel/15.0.1.133 > >>>>>>>>>>>> 15) xpmem/0.1-2.0502.57015.1.15.ari 22) > >>>>>>>>>>>> cray-mpich/7.4.1 > >>>>>>>>>>>> 2) nsg/1.2.0 9) > >>>>>>>>>>>> cray-libsci/16.07.1 > >>>>>>>>>>>> 16) dvs/2.5_0.9.0-1.0502.1958.2.55.ari 23) > >>>>>>>>>>>> slurm/edison > >>>>>>>>>>>> 3) eswrap/1.3.3-1.020200.1278.0 10) > >>>>>>>>>>>> udreg/2.3.2-1.0502.9889.2.20.ari 17) > >>>>>>>>>>>> alps/5.2.3-2.0502.9295.14.14.a > >>>>>>>>>>>> ri > >>>>>>>>>>>> 24) altd/2.0 > >>>>>>>>>>>> 4) switch/1.0-1.0502.57058.1.58.ari 11) > >>>>>>>>>>>> ugni/6.0-1.0502.10245.9.9.ari 18) rca/ > >>>>>>>>>>>> 1.0.0-2.0502.57212.2.56.ar > >>>>>>>>>>>> i > >>>>>>>>>>>> 25) darshan/2.3.1 > >>>>>>>>>>>> 5) craype-ivybridge 12) pmi/ > >>>>>>>>>>>> 5.0.10-1.0000.11050.0.0.ari 19) atp/2.0.2 26) > >>>>>>>>>>>> emacs/24.2 > >>>>>>>>>>>> 6) craype-network-aries 13) > >>>>>>>>>>>> dmapp/7.0.1-1.0502.10246.8.47.ari 20) PrgEnv-intel/5.2.56 > >>>>>>>>>>>> 27) > >>>>>>>>>>>> cray-hdf5-parallel/1.8.16 > >>>>>>>>>>>> 7) craype/2.4.2 14) > >>>>>>>>>>>> gni-headers/4.0-1.0502.10317.9.2.ari 21) cray-shmem/7.4.1 > >>>>>>>>>>>> > >>>>>>>>>>>> Thanks. > >>>>>>>>>>>> > >>>>>>>>>>>> treb > >>>>>>>>>>>> > >>>>>>>>>>>> -- > >>>>>>>>>>>> David Trebotich > >>>>>>>>>>>> Applied Numerical Algorithms Group > >>>>>>>>>>>> Lawrence Berkeley National Laboratory > >>>>>>>>>>>> (510) 486-5984 <%28510%29%20486-5984> office > >>>>>>>>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile > >>>>>>>>>>>> > >>>>>>>>>>>> > >>>>>>>>>>>> > >>>>>>>>>>>> > >>>>>>>>>>>> -- > >>>>>>>>>>>> > >>>>>>>>>>>> > >>>>>>>>>>> David Trebotich > >>>>>>>>>>> > >>>>>>>>>> Applied Numerical Algorithms Group > >>>>>>>>>> Lawrence Berkeley National Laboratory > >>>>>>>>>> (510) 486-5984 <%28510%29%20486-5984> office > >>>>>>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> > >>>>>>>>>> -- > >>>>>>>>>> > >>>>>>>>> > >>>>>>>>> David Trebotich > >>>>>>>> Applied Numerical Algorithms Group > >>>>>>>> Lawrence Berkeley National Laboratory > >>>>>>>> (510) 486-5984 <%28510%29%20486-5984> office > >>>>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> -- > >>>>>>> > >>>>>> David Trebotich > >>>>>> Applied Numerical Algorithms Group > >>>>>> Lawrence Berkeley National Laboratory > >>>>>> (510) 486-5984 <%28510%29%20486-5984> office > >>>>>> (510) 384-6868 <%28510%29%20384-6868> mobile > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> -- > >>> David Trebotich > >>> Applied Numerical Algorithms Group > >>> Lawrence Berkeley National Laboratory > >>> (510) 486-5984 office > >>> (510) 384-6868 mobile > >>> > >>> > >>> > >> -- > >> David Trebotich > >> Applied Numerical Algorithms Group > >> Computational Research Division > >> Lawrence Berkeley National Laboratory(510) 486-5984 office(510) 384-6868 > >> mobile > >> > >> > >> > > >
