I removed the INTEL-MPI from the environmental variables and I still have the same problem. When I configure it looks like it accepts the mpi_include and mpi_lib but when I want to build , it says the configure was with mpi but in build it appears to compile is using a non-mpich.
Mohammad ________________________________ From: Satish Balay <[email protected]> Sent: Monday, February 6, 2017 6:13:04 PM To: Mohammad S Dodaran Cc: petsc-dev Subject: Re: [petsc-dev] install petsc on windows 10 with mpi 1. configure.log is a cygwin simlink - so native mail app is unable to attach correctly. The actual file is in PETSC_DIR/PETSC_ARCH/lib/petsc/conf 2. Suggest doing the build without fftw and hdf5 packages [once the basic build succeeds - you can look at adding these pacakges.] 3. remove INTEL-MPI from your env - before running configure. [you might be able to use intel-mpi instead of ms-mpi - but we don't have any experience with it] Satish On Mon, 6 Feb 2017, Mohammad S Dodaran wrote: > now I'm trying to configure petsc 3.7 > i used the format you showd in your previous email for the directories of > fftw and hdf5 as below > > --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw > --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5 > > the result is the following > > TESTING: alternateConfigureLibrary from > config.packages.glut(config/BuildSystem/config/package.py:742) > TESTING: alternateConfigureLibrary from > config.packages.giflib(config/BuildSystem/config/package.py:742) > TESTING: alternateConfigureLibrary from > config.packages.scientificpython(config/BuildSystem/config/package.py:742) > TESTING: alternateConfigureLibrary from > config.packages.fiat(config/BuildSystem/config/package.py:742) > TESTING: configureLibrary from > config.packages.fftw(config/BuildSystem/config/package.py:679) > > ******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > ------------------------------------------------------------------------------- > --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw did not work > ******************************************************************************* > > i also attached the configure.log > > > ________________________________ > From: Satish Balay <[email protected]> > Sent: Monday, February 6, 2017 4:28:09 PM > To: Mohammad S Dodaran > Cc: Matthew Knepley; petsc-dev > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi > > >>>> > > Configure Options: --configModules=PETSc.Configure > --optionsModule=config.compilerOptions --with-cc="win32fe cl" > --with-fc="win32fe ifort" --with-cxx="win32fe cl" > --with-mpi-include="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64]" > > --with-mpi-lib="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpifec.lib]" > --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" > --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]" --download-fblaslapack=1 > --with-c2html=0 --with-debugging=0 --with-ssl=0 --with-x=0 PETSC_ARCH= > PETSC_DIR=/home/petsc-3.6.4 > <<<< > > > 'PETSC_ARCH=' > > Can you rerun with a non-empty PETSC_ARCH string - or let configure choost > default.. > > > --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" > > --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]" > > I don't think I've built these packages with MS compilers > before. Somehow they are not picked up anyway. For one - the format > here should be the following [but I don't know if that will make > configure check for them]: > > --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw > --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5 > > > PETSC_DIR=/home/petsc-3.6.4 > > Also - please use latest petsc-3.7 release. > > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: > > #error : "PETSc was configured with MPICH but > > now appears to be compiling using a non-MPICH mpi.h" > > Hm - configure is picking up Intel-MPI from your 'INCLUDE' env > variable - but not 'make' - not sure whats hapenning - but I think its > best to start a clean build with petsc-3.7 [unless you need 3.6 for a > specific need] > > Satish > > On Mon, 6 Feb 2017, Mohammad S Dodaran wrote: > > > hello > > > > > > i configured petsc and i was trying to make then this error appeared > > > > > > Using mpiexec: mpiexec > > ========================================== > > Building PETSc using GNU Make with 4 build threads > > ========================================== > > make[2]: Entering directory '/home/petsc-3.6.4' > > /usr/bin/python ./config/gmakegen.py --petsc-arch=../petsc-3.6.4 > > Use "/usr/bin/make V=1" to see the verbose compile lines. > > CC ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o > > CC ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o > > CC ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o > > CC ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o > > verboseinfo.c > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: > > #error : "PETSc was configured with MPICH but > > now appears to be compiling using a non-MPICH mpi.h" > > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o] > > Error 2 > > make[2]: *** Waiting for unfinished jobs.... > > verboseinfof.c > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: > > #error : "PETSc was configured with MPICH but > > now appears to be compiling using a non-MPICH mpi.h" > > make[2]: *** [gmakefile:161: > > ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o] Error 2 > > zverboseinfof.c > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: > > #error : "PETSc was configured with MPICH but > > now appears to be compiling using a non-MPICH mpi.h" > > make[2]: *** [gmakefile:161: > > ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o] Error 2 > > zsys.c > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: > > #error : "PETSc was configured with MPICH but > > now appears to be compiling using a non-MPICH mpi.h" > > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o] > > Error 2 > > make[2]: Leaving directory '/home/petsc-3.6.4' > > make[1]: *** [/home/petsc-3.6.4/lib/petsc/conf/rules:107: gnumake] Error 2 > > make[1]: Leaving directory '/home/petsc-3.6.4' > > **************************ERROR************************************* > > Error during compile, check ../petsc-3.6.4/lib/petsc/conf/make.log > > Send it and ../petsc-3.6.4/lib/petsc/conf/configure.log to > > [email protected] > > ******************************************************************** > > make: *** [makefile:30: all] Error 1 > > > > i have also attached the configure.log and make.log > > > > regards > > Mohammad > > > > > > > > ________________________________ > > From: Matthew Knepley <[email protected]> > > Sent: Monday, February 6, 2017 8:07:41 AM > > To: Mohammad S Dodaran > > Cc: petsc-dev > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi > > > > On Sun, Feb 5, 2017 at 11:26 PM, Mohammad S Dodaran > > <[email protected]<mailto:[email protected]>> wrote: > > > > Satish, > > > > Thanks for your quick response. as you see I can ls to the directory: > > > > ls /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include/ > > > > Yes, but as Satish said, there are spaces in the path above. We do not > > allow spaces in the path. > > You cannot give a path to configure with spaces. > > > > You can remove the spaces using the cygpath command that Satish showed. > > Please use that command. > > Remove the spaces from this path and give the spaceless path to configure. > > > > Thanks, > > > > Matt > > > > mpi.f90 mpi.h mpif.h mpio.h mspms.h pmidbg.h x64/ x86/ > > > > > > > > but I do not know why still it has the same problem. and my configure file > > looks strange. > > > > Best, > > > > Mohammad > > > > ________________________________ > > From: Satish Balay <[email protected]<mailto:[email protected]>> > > Sent: Sunday, February 5, 2017 10:58:35 PM > > To: Mohammad S Dodaran > > Cc: [email protected]<mailto:[email protected]> > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi > > > > Try to figureout path without spaces. > > > > cygpath -u `cygpath -s -m PATH` > > > > Make sure you can do "ls" on this path. > > > > And use it with petsc configure. > > > > balay@ps4 ~ > > $ cygpath -u `cygpath -s -m /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ > > SDKs/MPI/Include` > > /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include > > > > balay@ps4 ~ > > $ ls /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include > > mpi.f90 mpi.h mpif.h mpio.h mspms.h pmidbg.h x64 x86 > > > > balay@ps4 ~ > > $ > > > > For ex: - I use: > > > > >>>>>>>> > > $ cat config/examples/arch-mswin-intel.py > > #!/usr/bin/python > > if __name__ == '__main__': > > import sys > > import os > > sys.path.insert(0, os.path.abspath('config')) > > import configure > > configure_options = [ > > '--download-fblaslapack=1', > > '--with-cc=win32fe icl', > > '--with-cxx=win32fe icl', > > '--with-fc=win32fe ifort', > > > > '--with-mpi-include=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/,/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/x64]', > > > > '--with-mpi-lib=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpifec.lib,/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpi.lib]', > > '--with-mpiexec=/cygdrive/c/PROGRA~1/MICROS~2/Bin/mpiexec', > > '--with-shared-libraries=0', > > 'DATAFILESPATH=c:/cygwin64/home/petsc/datafiles', > > ] > > configure.petsc_configure(configure_options) > > > > <<<<<<<<<<< > > > > if you still have issues - send us configure.log for the failure. > > > > Satish > > > > On Sun, 5 Feb 2017, Mohammad S Dodaran wrote: > > > > > Dear Petsc developers, > > > > > > I am trying to install Petsc on windows 10 but I have a problem. I > > > installed MS-MPI v8<http://go.microsoft.com/FWLink/p/?LinkID=389556> > > > separately and in the configure options I use > > > > > > --with-mpi-include="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ > > > SDKs/MPI/Include" --with-mpi-lib="/cygdrive/c/Program\ Files\ > > > \(x86\)/Microsoft\ SDKs/MPI/Lib/x64/msmpi.lib" > > > > > > > > > But it gives error which says: > > > > > > *************************************************************** > > > ERROR in COMMAND LINE ARGUMENT to ./configure > > > ------------------------------------------------------------------------------- > > > Invalid directory: [/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ > > > SDKs/MPI/Include for key with-mpi-include > > > > > > > > > How should I solve it? > > > > > > Mohammad > > > > > > > > > > > > > -- > > What most experimenters take for granted before they begin their > > experiments is infinitely more interesting than any results to which their > > experiments lead. > > -- Norbert Wiener > > > >
