Thanks Jed for the Answer.
I am still having problems with this code. In summary what I changed
from PETSc 3.7 to 3.9 was:
- use of PETSC_NULL_MAT to evaluate if the matrix was defined
mat = PETSC_NULL_MAT
...
if(mat .eq. PETSC_NULL_MAT)then
create matrix,vectors, ksp
else
KSPSetInitialGuessNonzero
VecResetArray
end if
- modified MatSetValuesBlocked call
Previously it was:
call MatSetValuesBlocked(mat,1,N-1,IROW,LC(nnz),BB(nnz),INSERT_VALUES,ierr)
with N-1, LC(nnz), and BB(nnz) scalar values, the elements where
inserted one at a time
Modified to:
call
MatSetValuesBlocked(mat,1,[N-1],IROW,[LC(nnz)],[BB(nnz)],INSERT_VALUES,ierr)
After the matrix is built there is a call to
KSPSolve
When I run the program I get a lot of these errors:
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Object is in wrong state
[0]PETSC ERROR: Matrix is missing diagonal entry 1
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.9.2, unknown
[0]PETSC ERROR: ../../../UTCOMPRS on a named bandera by hector Wed May
23 18:08:07 2018
[0]PETSC ERROR: Configure options
--prefix=/home/hector/installed/petsc_git-intel-debug
--PETSC_DIR=/home/hector/dwnld_prog/petsc --PETSC_ARCH=linux-intel-debug
--CC=mpiicc --FC=mpiifort --CXX=mpiicpc --with-openmp=1
--with-valgrind=1 --with-valgrind-dir=/home/hector/installed
--with-parmetis-dir=/home/hector/installed/parmetis/
--with-metis-dir=/home/hector/installed/parmetis/
--with-zoltan-dir=/home/hector/installed/zoltan/
--with-hypre-dir=/home/hector/installed/hypre --download-ptscotch
--with-blaslapack-lib="[/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_intel_lp64.a,/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_core.a,/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_intel_thread.a]"
--with-scalapack-include=/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/include
--with-scalapack-lib="[/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_scalapack_lp64.a,/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.a]"
--with-shared-libraries=0 --FC_LINKER_FLAGS="-qopenmp -qopenmp-link
static" --FFLAGS="-qopenmp -qopenmp-link static"
--LIBS="-Wl,--start-group
/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_intel_lp64.a
/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_core.a
/home/hector/installed/intel/compilers_and_libraries_2019.0.046/linux/mkl/lib/intel64/libmkl_intel_thread.a
-Wl,--end-group -liomp5 -ldl -lpthread -lm"
[0]PETSC ERROR: #305869 MatILUFactorSymbolic_SeqBAIJ() line 369 in
/home/hector/dwnld_prog/petsc/src/mat/impls/baij/seq/baijfact2.c
[0]PETSC ERROR: #305870 MatILUFactorSymbolic() line 6522 in
/home/hector/dwnld_prog/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: #305871 PCSetUp_ILU() line 144 in
/home/hector/dwnld_prog/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
[0]PETSC ERROR: #305872 PCSetUp() line 923 in
/home/hector/dwnld_prog/petsc/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: #305873 KSPSetUp() line 381 in
/home/hector/dwnld_prog/petsc/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: #305874 KSPSolve() line 612 in
/home/hector/dwnld_prog/petsc/src/ksp/ksp/interface/itfunc.c
What could be the problem?
Thanks for your help,
Hector
On 05/22/2018 06:28 PM, Jed Brown wrote:
Hector E Barrios Molano <[email protected]> writes:
Hi PETSc Experts!
I am updating a Fortran code that use PETSc 3.7 to version 3.9.2 (from
git repository).
Such code declares:
Mat mat
and used it as an integer, for example, to assign an initial value and
test it to know if the matrix has been created by PETSc.
data mat/-1/
if (mat .eq. -1) then
You can use PETSC_NULL_MAT
With the new PETSc Fortran modules the compiler complains about this and
stops.
Is there a better way to achieve this? So that I do not have to set an
predefined value to Mat type to test if it was already created by PETSc?
If not, Is there a way to access the value in mat?
Looking at the source code type(tMat) has "v" variable, so could I used
as mat%v?
Please no.
