Hi Mark,
have a look at config/examples/arch-linux-knl.py, which contains on line 20:
'--with-blaslapack-dir='+os.environ['MKLROOT'],
It's important that you specify the BLAS library *and* the MKL include
directory (either via --with-blaslapack-dir or via a pair of
--with-blaslapack-include and --with-blaslapack-lib), otherwise it's not
possible to compile the aijmkl code.
Best regards,
Karli
On 06/30/2018 09:55 PM, Mark Adams wrote:
It builds and runs but looks like PETSc does not register aijmkl matrices.
---
> [0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing
package:
http://www.mcs.anl.gov/petsc/documentation/installation.html#external
> [0]PETSC ERROR: Unknown Mat type given: aijmkl
> [0]PETSC ERROR: See
http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
> [0]PETSC ERROR: Petsc Release Version 3.9.2, unknown
> [0]PETSC ERROR:
/global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex19
on a named nid02516 by madams Sat Jun 30 12:48:10 2018
> [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2
--known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8
--known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8
--known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
--known-mpi-int64_t=1 --known-mpi-c-double-complex=1
--known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn
COPTFLAGS=" -g -O0 -hcpu=mic-knl -qopenmp-simd" CXXOPTFLAGS="-g -O0
-hcpu=mic-knl -qopenmp-simd" FOPTFLAGS=" -g -O0 -hcpu=mic-knl
-qopenmp-simd" --download-metis=1
--with-hypre-dir=/global/homes/m/madams/tmp/hypre-2.14.0
--download-parmetis=1
--with-blaslapack-lib=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64/libmkl_intel_thread.a
--with-debugging=1 --with-mpiexec=srun --with-batch=1
--known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0
--with-64-bit-indices=1 PETSC_ARCH=arch-cori-knl-dbg64-intel-omp
--with-openmp=1 --download-p4est=0 --with-x=0
--prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-dbg64-intel-omp
PETSC_DIR=/global/homes/m/madams/petsc_install/petsc
> [0]PETSC ERROR: #1 MatSetType() line 61 in
/global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c
> [0]PETSC ERROR: #2 MatSetFromOptions() line 229 in
/global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c
> [0]PETSC ERROR: #3 DMCreateMatrix_DA() line 793 in
/global/u2/m/madams/petsc_install/petsc/src/dm/impls/da/fdda.c
> [0]PETSC ERROR: #4 DMCreateMatrix() line 1262 in
/global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c
> [0]PETSC ERROR: #5 SNESSetUpMatrices() line 646 in
/global/u2/m/madams/petsc_install/petsc/src/snes/interface/snes.c
> [0]PETSC ERROR: #6 SNESSetUp_NEWTONLS() line 296 in
/global/u2/m/madams/petsc_install/petsc/src/snes/impls/ls/ls.c
> [0]PETSC ERROR: #7 SNESSetUp() line 2908 in
/global/u2/m/madams/petsc_install/petsc/src/snes/interface/snes.c
> [0]PETSC ERROR: #8 SNESSolve() line 4300 in
/global/u2/m/madams/petsc_install/petsc/src/snes/interface/snes.c
> [0]PETSC ERROR: #9 main() line 161 in
/global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex19.c
> [0]PETSC ERROR: PETSc Option Table entries:
> [0]PETSC ERROR: -da_refine 3
> [0]PETSC ERROR: -ksp_monitor
> [0]PETSC ERROR: -mat_type aijmkl
> [0]PETSC ERROR: -options_left
> [0]PETSC ERROR: -pc_type gamg
> [0]PETSC ERROR: -snes_monitor_short
> [0]PETSC ERROR: -snes_view
> [0]PETSC ERROR: ----------------End of Error Message -------se
On Sat, Jun 30, 2018 at 3:08 PM Mark Adams <mfad...@lbl.gov
<mailto:mfad...@lbl.gov>> wrote:
OK, that got further.
On Sat, Jun 30, 2018 at 3:03 PM Mark Adams <mfad...@lbl.gov
<mailto:mfad...@lbl.gov>> wrote:
Like this?
'--with-blaslapack-lib=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64/libmkl_intel_thread.a',
On Sat, Jun 30, 2018 at 3:00 PM Mark Adams <mfad...@lbl.gov
<mailto:mfad...@lbl.gov>> wrote:
Specify either "--with-blaslapack-dir" or
"--with-blaslapack-lib --with-blaslapack-include".
But not both!
Get rid of the dir option, and give the full path to the
library.
What is the syntax for giving the full path?
