yep: [0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Object is in wrong state [0]PETSC ERROR: Not for unassembled matrix [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.9.3-681-g56949d1303 GIT Date: 2018-07-02 18:15:56 -0500 [0]PETSC ERROR: /global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex56 on a named nid02516 by madams Wed Jul 4 06:42:23 2018 [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-int64_t=1 --known-mpi-c-double-complex=1 --known-mklspblas-supports-zero-based=0 --known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn COPTFLAGS=" -g -O0 -mkl -static-intel" CXXOPTFLAGS="-g -O0 -mkl -static-intel" FOPTFLAGS=" -g -O0 -mkl -static-intel" --download-metis=1 --with-hypre-dir=/global/homes/m/madams/tmp/hypre32-2.14.0 --download-parmetis=1 LIBS="-L/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" --with-blaslapack-include=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/include --with-debugging=0 --with-mpiexec=srun --with-batch=1 --known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0 --with-64-bit-indices=0 PETSC_ARCH=arch-cori-knl-opt-intel-omp --with-openmp=1 --download-p4est=0 --with-x=0 --prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp PETSC_DIR=/global/homes/m/madams/petsc_install/petsc [0]PETSC ERROR: #1 MatConvert() line 4066 in /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matrix.c [0]PETSC ERROR: #2 MatSetType() line 67 in /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c [0]PETSC ERROR: #3 MatSetFromOptions() line 229 in /global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c [0]PETSC ERROR: #4 DMCreateMatrix_Plex() line 1137 in /global/u2/m/madams/petsc_install/petsc/src/dm/impls/plex/plex.c [0]PETSC ERROR: #5 DMCreateMatrix() line 1266 in /global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c [0]PETSC ERROR: #6 main() line 428 in /global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex56.c On Wed, Jul 4, 2018 at 9:57 AM Matthew Knepley <[email protected]> wrote: > On Wed, Jul 4, 2018 at 8:47 AM Mark Adams <[email protected]> wrote: > >> Sorry, this error was with MKL matrices. It is still an error inside of >> Plex. My non-Plex tests (KSP) now work in a branch (pushed). >> > > Ah, I might know what this is. When you ask the DM to create a matrix, it > tries to convert it to the internal type > -dm_mat_type. Is this set to the type you want? Its possible we have some > logic problem with when the conversion happens > that does not get triggered in the regular scenarios. > > Matt > > >> On Tue, Jul 3, 2018 at 7:24 PM Mark Adams <[email protected]> wrote: >> >>> >>> >>> On Tue, Jul 3, 2018 at 6:26 PM Jed Brown <[email protected]> wrote: >>> >>>> "Smith, Barry F." <[email protected]> writes: >>>> >>>> > Runs fine in the master branch; do you really need it to work in >>>> maint. >>>> >>>> Uh, many users work with releases. If this is a "regression" it implies >>>> that it worked at some point in the past. In that case, we should fix >>>> it in 'maint' even if some new feature in 'master' has also fixed it. >>>> Note that Mark's prompt says he's on 'master', not 'maint'. >>>> >>> >>> Yea, let me double check this. >>> >>> >>>> >>>> > Barry >>>> > >>>> > >>>> >> On Jul 3, 2018, at 6:39 AM, Mark Adams <[email protected]> wrote: >>>> >> >>>> >> SNES ex56 seems to have regressed: >>>> >> >>>> >> 04:35 nid02516 master *= >>>> ~/petsc_install/petsc/src/snes/examples/tutorials$ make >>>> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp >>>> PETSC_ARCH="" runex56 >>>> >> srun -n 1 ./ex56 -cells 2,2,1 -max_conv_its 3 -petscspace_order 2 >>>> -snes_max_it 2 -ksp_max_it 100 -ksp_type cg -ksp_rtol 1.e-11 -ksp_norm_type >>>> unpreconditioned -snes_rtol 1.e-10 -pc_type gamg -pc_gamg_type agg >>>> -pc_gamg_agg_nsmooths 1 -pc_gamg_coarse_eq_limit 1000 >>>> -pc_gamg_reuse_interpolation true -pc_gamg_square_graph 1 >>>> -pc_gamg_threshold 0.05 -pc_gamg_threshold_scale .0 -ksp_converged_reason >>>> -snes_monitor_short -ksp_monitor_short -snes_converged_reason >>>> -use_mat_nearnullspace true -mg_levels_ksp_max_it 1 -mg_levels_ksp_type >>>> chebyshev -mg_levels_esteig_ksp_type cg -mg_levels_esteig_ksp_max_it 10 >>>> -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05 -mg_levels_pc_type jacobi >>>> -petscpartitioner_type simple -mat_block_size 3 -matptap_via scalable >>>> -ex56_dm_view -run_type 1 >>>> >> OMP: Warning #239: KMP_AFFINITY: granularity=fine will be used. >>>> >>>> >>>> >> [0]PETSC ERROR: --------------------- Error Message >>>> -------------------------------------------------------------- >>>> >>>> >> [0]PETSC ERROR: Object is in wrong state >>>> >>>> >>>> >> [0]PETSC ERROR: Not for unassembled matrix >>>> >>>> >>>> >> [0]PETSC ERROR: See >>>> http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble >>>> shooting. >>>> >>>> >> [0]PETSC ERROR: Petsc Development GIT revision: >>>> v3.9.2-825-g3a11c7608d GIT Date: 2018-07-01 06:15:09 +0200 >>>> >>>> >> [0]PETSC ERROR: >>>> /global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex56 >>>> on a named nid02516 by madams Tue Jul 3 04:35:52 2018 >>>> >>>> >> [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768 >>>> --known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8 >>>> --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 >>>> --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 >>>> --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 >>>> --known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4 >>>> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-int64_t=1 >>>> --known-mpi-c-double-complex=1 --known-mklspblas-supports-zero-based=0 >>>> --known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn >>>> COPTFLAGS=" -g -O0 -mkl -static-intel" CXXOPTFLAGS="-g -O0 -mkl >>>> -static-intel" FOPTFLAGS=" -g -O0 -mkl -static-intel" --download-metis=1 >>>> --with-hypre-dir=/global/homes/m/madams/tmp/hypre32-2.14.0 >>>> --download-parmetis=1 >>>> LIBS="-L/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64 >>>> -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" >>>> --with-blaslapack-include=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/include >>>> --with-debugging=1 --with-mpiexec=srun --with-batch=1 >>>> --known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0 >>>> --with-64-bit-indices=0 PETSC_ARCH=arch-cori-knl-opt-intel-omp >>>> --with-openmp=1 --download-p4est=0 --with-x=0 >>>> --prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp >>>> PETSC_DIR=/global/homes/m/madams/petsc_install/petsc >>>> >> [0]PETSC ERROR: #1 MatConvert() line 4066 in >>>> /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matrix.c >>>> >> [0]PETSC ERROR: #2 MatSetType() line 67 in >>>> /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c >>>> >> [0]PETSC ERROR: #3 MatSetFromOptions() line 229 in >>>> /global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c >>>> >> [0]PETSC ERROR: #4 DMCreateMatrix_Plex() line 1137 in >>>> /global/u2/m/madams/petsc_install/petsc/src/dm/impls/plex/plex.c >>>> >> [0]PETSC ERROR: #5 DMCreateMatrix() line 1266 in >>>> /global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c >>>> >> [0]PETSC ERROR: #6 main() line 428 in >>>> /global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex56.c >>>> >> [0]PETSC ERROR: PETSc Option Table entries: >>>> >> [0]PETSC ERROR: -cells 2,2,1 >>>> >> [0]PETSC ERROR: -ex56_dm_refine 0 >>>> >> [0]PETSC ERROR: -ex56_dm_view >>>> >> [0]PETSC ERROR: -ksp_converged_reason >>>> >> [0]PETSC ERROR: -ksp_max_it 100 >>>> >> [0]PETSC ERROR: -ksp_monitor_short >>>> >> [0]PETSC ERROR: -ksp_norm_type unpreconditioned >>>> >> [0]PETSC ERROR: -ksp_rtol 1.e-11 >>>> >> [0]PETSC ERROR: -ksp_type cg >>>> >> [0]PETSC ERROR: -mat_block_size 3 >>>> >> [0]PETSC ERROR: -mat_type aijmkl >>>> >> [0]PETSC ERROR: -matptap_via scalable >>>> >> [0]PETSC ERROR: -max_conv_its 3 >>>> >> [0]PETSC ERROR: -mg_levels_esteig_ksp_max_it 10 >>>> >> [0]PETSC ERROR: -mg_levels_esteig_ksp_type cg >>>> >> [0]PETSC ERROR: -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05 >>>> >> [0]PETSC ERROR: -mg_levels_ksp_max_it 1 >>>> >> [0]PETSC ERROR: -mg_levels_ksp_type chebyshev >>>> >> [0]PETSC ERROR: -mg_levels_pc_type jacobi >>>> >> [0]PETSC ERROR: -pc_gamg_agg_nsmooths 1 >>>> >> [0]PETSC ERROR: -pc_gamg_coarse_eq_limit 1000 >>>> >> [0]PETSC ERROR: -pc_gamg_reuse_interpolation true >>>> >> [0]PETSC ERROR: -pc_gamg_square_graph 1 >>>> >> >>>> >>> > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ <http://www.caam.rice.edu/~mk51/> >
