The primary error is:
>>>>>>>
make[1]: Leaving directory '/cygdrive/c/sources/petsc'
^[[1;31m**************************ERROR*************************************
Error during compile, check windows-intel-debug/lib/petsc/conf/make.log
Send it and windows-intel-debug/lib/petsc/conf/configure.log to
[email protected]
********************************************************************^[[0;39m^[[0;49m
<<<<<<<<<
The tirgger for this is:
>>>>>>>>
/usr/bin/sh: -c: line 0: syntax error near unexpected token `('
/usr/bin/sh: -c: line 0: `echo "Using libraries:
-L/cygdrive/c/sources/petsc/windows-intel-debug/lib /cygdrive/c/Program\ Files\
\(x86\)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_scalapack_lp64.lib
/cygdrive/c/Program\ Files\
\(x86\)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_blacs_intelmpi_lp64.lib
/cygdrive/c/installed/hypre/lib/HYPRE.lib /cygdrive/c/Program\ Files\
\(x86\)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib
/cygdrive/c/Program\ Files\
\(x86\)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_core.lib
/cygdrive/c/Program\ Files\
\(x86\)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib
/cygdrive/c/installed/zoltan/lib/zoltan.lib
/cygdrive/c/installed/parmetis/lib/parmetis.lib
/cygdrive/c/installed/parmetis/lib/metis.lib /cygdrive/c/Program\ Files\
\(x86\)/IntelSWTools/compilers_and_libraries_2018/windows/mpi/intel64/lib/release_mt/impi.lib
Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib libiomp5md.lib
-lpetsc -l"/cygdrive/c/Program -lFiles
-l(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib"
-l"/cygdrive/c/Program -lFiles
-l(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib"
-l"/cygdrive/c/Program -lFiles
-l(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64//mkl_core.lib"
-l"/cygdrive/c/Program -lFiles
-l(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_scalapack_lp64.lib"
-l"/cygdrive/c/Program -lFiles
-l(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_blacs_intelmpi_lp64.lib""'
make[1]: [makefile:110: info] Error 1 (ignored)
<<<<<<<<<<<
The line that got executed is:
-@echo "Using libraries: ${PETSC_LIB}"
You can ignore this error. Its strange that the contents of PETSC_LIB is
causing a shell error.
Your configure line is a bit compilcated.
>>>>>>>>>>>>>
Using configure Options: --prefix=/cygdrive/c/installed/petsc_git-intel-debug/
--PETSC_DIR=/cygdrive/c/sources/petsc --PETSC_ARCH=windows-intel-debug
--with-cc="win32fe cl" --with-fc="win32fe ifort"
--with-mpi-include="[/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mpi/intel64/include]"
--with-mpi-lib="[/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mpi/intel64/lib/release_mt/impi.lib]"
--with-openmp=1
--with-parmetis-lib=/cygdrive/c/installed/parmetis/lib/parmetis.lib
--with-parmetis-include=/cygdrive/c/installed/parmetis/include
--with-metis-lib=/cygdrive/c/installed/parmetis/lib/metis.lib
--with-metis-include=/cygdrive/c/installed/parmetis/include
--with-zoltan-include=/cygdrive/c/installed/zoltan/include
--with-zoltan-lib=/cygdrive/c/installed/zoltan/lib/zoltan.lib
--with-hypre-include=/cygdrive/c/installed/hypre/include
--with-hypre-lib=/cygdrive/c/installed/hypre/lib/HYPRE.lib
--with-blaslapack-lib="[/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Program
Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Program
Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib]"
--with-scalapack-include="/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/include"
--with-scalapack-lib="[/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_scalapack_lp64.lib,/cygdrive/c/Program
Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_blacs_intelmpi_lp64.lib]"
--with-shared-libraries=0 -LIBS=""/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib"
"/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib"
"/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64//mkl_core.lib"
"/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_scalapack_lp64.lib"
"/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_blacs_intelmpi_lp64.lib"
libiomp5md.lib"
<<<<<<<<<<<<<<
And some of this stuff [that configure formatted] is wrong.
>>>
-l"/cygdrive/c/Program -lFiles
-l(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib"
-l"/cygdrive/c/Program -lFiles
<<<
You can cleanly specify options to configure - by avoiding quotes, python list
syntax - and using dos short paths.
For ex: use the following 'cygpath' command [from cygwin] to get the dos short
path - that can be used with petsc configure.
balay@ps4 ~
$ cygpath -u `cygpath -ms 'C:/Program Files (x86)/Microsoft SDKs/MPI/Include/'`
/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/
This way - you can avoid stuff like:
--with-blaslapack-lib="[/cygdrive/c/Program Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib,/cygdrive/c/Program
Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_core.lib,/cygdrive/c/Program
Files
(x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib]"
And simpilify it to something like:
--with-blaslapack-lib='-L/cygdrive/c/PROGRA~2/INTELS~1/COMPIL~2/windows/mkl/lib/intel64
mkl_intel_lp64_dll.lib mkl_sequential_dll.lib mkl_core_dll.lib'
Check config/examples/arch-mswin-opt-impi.py for an example [in python script
notation]
Satish
On Fri, 6 Jul 2018, Smith, Barry F. wrote:
>
> This is not the cause of your problem but you have the wrong version of
> hypre installed for the version of PETSc.
>
> CC windows-intel-debug/obj/mat/impls/hypre/mhypre.o
> mhypre.c
> C:\sources\petsc\src\mat\impls\hypre\mhypre.c(1453): warning C4002: too many
> actual parameters for macro 'hypre_TFree'
>
> You need to use the same version as is listed in
> config/BuildSystem/config/packages/hypre.py
>
> If you run code that uses hypre it will crash.
>
> Barry
>
>
>
>
>
> > On Jul 5, 2018, at 7:21 PM, Hector E Barrios Molano <[email protected]>
> > wrote:
> >
> > Hi PETSc Experts,
> >
> > I am compiling PETSc from git repository on Windows 7. I am getting the
> > following error, attached you will find make.log file:
> >
> > CC windows-intel-debug/obj/tao/leastsquares/impls/pounders/gqt.o
> > gqt.c
> > FC windows-intel-debug/obj/dm/f90-mod/petscdmplexmod.o
> > FC windows-intel-debug/obj/ksp/f90-mod/petsckspmod.o
> > FC windows-intel-debug/obj/snes/f90-mod/petscsnesmod.o
> > FC windows-intel-debug/obj/ts/f90-mod/petsctsmod.o
> > FC windows-intel-debug/obj/tao/f90-mod/petsctaomod.o
> > AR windows-intel-debug/lib/libpetsc.lib
> > RANLIB windows-intel-debug/lib/libpetsc.lib
> > make[2]: Leaving directory '/cygdrive/c/sources/petsc'
> > make[1]: Leaving directory '/cygdrive/c/sources/petsc'
> > **************************ERROR*************************************
> > Error during compile, check windows-intel-debug/lib/petsc/conf/make.log
> > Send it and windows-intel-debug/lib/petsc/conf/configure.log to
> > [email protected]
> > ********************************************************************
> > make: *** [makefile:36: all] Error 1
> >
> >
> > Here is the configure command I am using:
> >
> > ./configure --prefix=/cygdrive/c/installed/petsc_git-intel-debug/
> > --PETSC_DIR=/cygdrive/c/sources/petsc --PETSC_ARCH=windows-intel-debug
> > --with-cc='win32fe cl' --with-fc='win32fe ifort'
> > --with-mpi-include=["/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mpi/intel64/include"]
> > --with-mpi-lib=["/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mpi/intel64/lib/release_mt/impi.lib"]
> > --with-openmp=1
> > --with-parmetis-lib=/cygdrive/c/installed/parmetis/lib/parmetis.lib
> > --with-parmetis-include=/cygdrive/c/installed/parmetis/include
> > --with-metis-lib=/cygdrive/c/installed/parmetis/lib/metis.lib
> > --with-metis-include=/cygdrive/c/installed/parmetis/include
> > --with-zoltan-include=/cygdrive/c/installed/zoltan/include
> > --with-zoltan-lib=/cygdrive/c/installed/zoltan/lib/zoltan.lib
> > --with-hypre-include=/cygdrive/c/installed/hypre/include
> > --with-hypre-lib=/cygdrive/c/installed/hypre/lib/HYPRE.lib
> > --with-blas-lapack-lib=["/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib","/cygdrive/c/Program
> > Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_core.lib","/cygdrive/c/Program
> > Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib"]
> > --with-scalapack-include="/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/include"
> > --with-scalapack-lib=["/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_scalapack_lp64.lib","/cygdrive/c/Program
> > Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_blacs_intelmpi_lp64.lib"]
> > --with-shared-libraries=0 -LIBS="\"/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_lp64.lib\"
> > \"/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_intel_thread.lib\"
> > \"/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64//mkl_core.lib\"
> > \"/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_scalapack_lp64.lib\"
> > \"/cygdrive/c/Program Files
> > (x86)/IntelSWTools/compilers_and_libraries_2018/windows/mkl/lib/intel64/mkl_blacs_intelmpi_lp64.lib\"
> > libiomp5md.lib"
> >
> > What could be the problem?
> >
> > Thanks,
> >
> > Hector
> >
> >
> > <make.log>
>
