This is a harmless (and rather silly warning).
Barry
> On Oct 17, 2018, at 2:16 PM, Hector E Barrios Molano <[email protected]>
> wrote:
>
> Hi PETSc Experts!
>
> I am compiling PETSc from git repository. Everything goes smooth. However,
> when I test the installation I get the following output:
>
> make PETSC_DIR=/home/hector/installed/libraries_intel/petsc_git-debug
> PETSC_ARCH="" test
> Running test examples to verify correct installation
> Using PETSC_DIR=/home/hector/installed/libraries_intel/petsc_git-debug and
> PETSC_ARCH=
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /home/hector/dwnld_prog/petsc/src/snes/examples/tutorials ex19
> *********************************************************************************
> mpicc -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing
> -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -fopenmp
> -I/home/hector/installed/libraries_intel/petsc_git-debug/include
> -I/home/hector/installed/libraries_intel/hypre/include
> -I/home/hector/installed/libraries_intel/zoltan/include
> -I/home/hector/installed/libraries_intel/parmetis/include
> -I/home/hector/installed/include `pwd`/ex19.c
> mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
> -fstack-protector -fvisibility=hidden -g3 -fopenmp -o ex19 ex19.o
> -L/home/hector/installed/libraries_intel/petsc_git-debug/lib
> -Wl,-rpath,/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/mkl/lib/intel64
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/mkl/lib/intel64
> -Wl,-rpath,/home/hector/installed/libraries_intel/hypre/lib
> -L/home/hector/installed/libraries_intel/hypre/lib
> -Wl,-rpath,/home/hector/installed/libraries_intel/zoltan/lib
> -L/home/hector/installed/libraries_intel/zoltan/lib
> -Wl,-rpath,/home/hector/installed/libraries_intel/parmetis/lib
> -L/home/hector/installed/libraries_intel/parmetis/lib
> -Wl,-rpath,/home/hector/installed/libraries_intel/petsc_git-debug/lib
> -L/home/hector/installed/libraries_intel/petsc_git-debug/lib
> -L/home/hector/installed/libraries_intel/openmpi/lib
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/ipp/lib/intel64
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/tbb/lib/intel64/gcc4.1
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/daal/lib/intel64_lin
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/tbb/lib/intel64_lin/gcc4.4
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64_lin
> -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
> -Wl,-rpath,/home/hector/installed/libraries_intel/openmpi/lib
> -Wl,--start-group -Wl,--end-group -lpetsc -lmkl_scalapack_lp64
> -lmkl_blacs_intelmpi_lp64 -lHYPRE -lmkl_intel_lp64 -lmkl_core
> -lmkl_intel_thread -lzoltan -lparmetis -lmetis -lptesmumps -lptscotchparmetis
> -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lX11 -lstdc++ -ldl
> -liomp5 -lpthread -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh
> -lmpi -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -limf -lifport
> -lifcoremt -lsvml -lipgo -lirc -lgcc_s -lirc_s -lrt -lm -lpthread -lz
> -lstdc++ -ldl -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -liomp5 -ldl
> -lpthread -lm
> /share/apps/intel3/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64/libimf.so:
> warning: warning: feupdateenv is not implemented and will always fail
> true ex19
> rm ex19.o
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
> process
> C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
> processes
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /home/hector/dwnld_prog/petsc/src/snes/examples/tutorials ex5f
> *********************************************************
> mpifort -c -qopenmp -qopenmp-link static -g -fopenmp
> -I/home/hector/installed/libraries_intel/petsc_git-debug/include
> -I/home/hector/installed/libraries_intel/hypre/include
> -I/home/hector/installed/libraries_intel/zoltan/include
> -I/home/hector/installed/libraries_intel/parmetis/include
> -I/home/hector/installed/include -o ex5f.o ex5f.F90
> mpifort -qopenmp -qopenmp-link static -qopenmp -qopenmp-link static -g
> -fopenmp -o ex5f ex5f.o
> -L/home/hector/installed/libraries_intel/petsc_git-debug/lib
> -Wl,-rpath,/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/mkl/lib/intel64
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/mkl/lib/intel64
> -Wl,-rpath,/home/hector/installed/libraries_intel/hypre/lib
> -L/home/hector/installed/libraries_intel/hypre/lib
> -Wl,-rpath,/home/hector/installed/libraries_intel/zoltan/lib
> -L/home/hector/installed/libraries_intel/zoltan/lib
> -Wl,-rpath,/home/hector/installed/libraries_intel/parmetis/lib
> -L/home/hector/installed/libraries_intel/parmetis/lib
> -Wl,-rpath,/home/hector/installed/libraries_intel/petsc_git-debug/lib
> -L/home/hector/installed/libraries_intel/petsc_git-debug/lib
> -L/home/hector/installed/libraries_intel/openmpi/lib
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/ipp/lib/intel64
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/tbb/lib/intel64/gcc4.1
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/daal/lib/intel64_lin
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/tbb/lib/intel64_lin/gcc4.4
>
> -L/share/apps/intel3/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64_lin
> -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
> -Wl,-rpath,/home/hector/installed/libraries_intel/openmpi/lib
> -Wl,--start-group -Wl,--end-group -lpetsc -lmkl_scalapack_lp64
> -lmkl_blacs_intelmpi_lp64 -lHYPRE -lmkl_intel_lp64 -lmkl_core
> -lmkl_intel_thread -lzoltan -lparmetis -lmetis -lptesmumps -lptscotchparmetis
> -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lX11 -lstdc++ -ldl
> -liomp5 -lpthread -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh
> -lmpi -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -limf -lifport
> -lifcoremt -lsvml -lipgo -lirc -lgcc_s -lirc_s -lrt -lm -lpthread -lz
> -lstdc++ -ldl -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -liomp5 -ldl
> -lpthread -lm
> /share/apps/intel3/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64/libimf.so:
> warning: warning: feupdateenv is not implemented and will always fail
> rm ex5f.o
> Fortran example src/snes/examples/tutorials/ex5f run successfully with 1 MPI
> process
> Completed test examples
>
> Here is the configure command I am using:
>
> ./configure --prefix=$DEV_lib_dir/petsc_git-debug
> --PETSC_DIR=/home/hector/dwnld_prog/petsc --PETSC_ARCH=linux-intel-debug
> --CC=mpicc --FC=mpifort --CXX=mpicxx --with-openmp=1 --with-valgrind=1
> --with-valgrind-dir=/home/hector/installed
> --with-parmetis-dir=$DEV_lib_dir/parmetis/
> --with-metis-dir=$DEV_lib_dir/parmetis/
> --with-zoltan-dir=$DEV_lib_dir/zoltan/ --with-hypre-dir=$DEV_lib_dir/hypre
> --download-ptscotch
> --with-blas-lapack-lib=\[${MKLROOT}/lib/intel64/libmkl_intel_lp64.a,${MKLROOT}/lib/intel64/libmkl_core.a,${MKLROOT}/lib/intel64/libmkl_intel_thread.a\]
> --with-scalapack-include=${MKLROOT}/include
> --with-scalapack-lib=\[${MKLROOT}/lib/intel64/libmkl_scalapack_lp64.a,${MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.a\]
> --with-shared-libraries=0 --FC_LINKER_FLAGS="-qopenmp -qopenmp-link static"
> --FFLAGS="-qopenmp -qopenmp-link static" --LIBS="-Wl,--start-group
> ${MKLROOT}/lib/intel64/libmkl_intel_lp64.a
> ${MKLROOT}/lib/intel64/libmkl_core.a
> ${MKLROOT}/lib/intel64/libmkl_intel_thread.a -Wl,--end-group -liomp5 -ldl
> -lpthread -lm"
>
> What could be the problem?
>
> Thank you for your help!
>
> Hector
