If I'm reading the error message correctly, isn't this a problem with the PETSc module for Spack (which you, Satish, and myself have contributed to), not with anything to do with Spack itself?
"Smith, Barry F." <bsm...@mcs.anl.gov> writes: > Needs some more work > > > ./bin/spack install petsc+hypre > ==> mpich@3.2 : externally installed in /usr/local > ==> mpich@3.2 : generating module file > ==> mpich@3.2 : registering into DB > ==> zlib@1.2.8 : externally installed in /usr > ==> zlib@1.2.8 : generating module file > ==> zlib@1.2.8 : registering into DB > ==> Installing hdf5 > ==> Fetching > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk/hdf5-1.10.3.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk > ==> No patches needed for hdf5 > ==> Building hdf5 [AutotoolsPackage] > ==> Executing phase: 'autoreconf' > ==> Executing phase: 'configure' > ==> Executing phase: 'build' > ==> Executing phase: 'install' > ==> Successfully installed hdf5 > Fetch: 4.37s. Build: 2m 5.47s. Total: 2m 9.84s. > [+] > /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/hdf5-1.10.3-qe62ngz3szijov3frsc6sclbfylst3qk > ==> Installing veclibfort > ==> Fetching https://github.com/mcg1969/vecLibFort/archive/0.4.2.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk/0.4.2.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk > ==> No patches needed for veclibfort > ==> Building veclibfort [Package] > ==> Executing phase: 'install' > ==> Successfully installed veclibfort > Fetch: 1.02s. Build: 1.73s. Total: 2.75s. > [+] > /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/veclibfort-0.4.2-jgzyxocuu54r2lqckfugttbk3gpvhthk > ==> Installing hypre > ==> Fetching https://github.com/LLNL/hypre/archive/v2.15.0.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg/v2.15.0.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg > ==> No patches needed for hypre > ==> Building hypre [Package] > ==> Executing phase: 'install' > ==> Successfully installed hypre > Fetch: 1.68s. Build: 45.02s. Total: 46.70s. > [+] > /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/hypre-2.15.0-zzqagb6smd7uzznitrlvx3eor4oay3dg > ==> cmake@3.7.1 : externally installed in /usr/local/bin > ==> cmake@3.7.1 : generating module file > ==> cmake@3.7.1 : registering into DB > ==> Installing metis > ==> Fetching > http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y/metis-5.1.0.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y > ==> Applied patch install_gklib_defs_rename.patch > ==> Ran patch() for metis > ==> Building metis [Package] > ==> Executing phase: 'install' > ==> Successfully installed metis > Fetch: 3.86s. Build: 8.33s. Total: 12.19s. > [+] > /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/metis-5.1.0-x7k25qyuivjq4t4jb32gxagfa3qc4b3y > ==> Installing parmetis > ==> Fetching > http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h/parmetis-4.0.3.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h > ==> Applied patch enable_external_metis.patch > ==> Applied patch pkg-parmetis-1c1a9fd0f408dc4d42c57f5c3ee6ace411eb222b.patch > ==> Applied patch pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch > ==> Building parmetis [CMakePackage] > ==> Executing phase: 'cmake' > ==> Executing phase: 'build' > ==> Executing phase: 'install' > ==> Successfully installed parmetis > Fetch: 3.71s. Build: 8.08s. Total: 11.79s. > [+] > /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/parmetis-4.0.3-st6cbngrj2r5jgtenru4f6jbtrbvhp3h > ==> python@2.7.1 : externally installed in /usr > ==> python@2.7.1 : generating module file > ==> python@2.7.1 : registering into DB > ==> Installing superlu-dist > ==> Fetching https://github.com/xiaoyeli/superlu_dist/archive/v5.4.0.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn/v5.4.0.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn > ==> No patches needed for superlu-dist > ==> Building superlu-dist [CMakePackage] > ==> Executing phase: 'cmake' > ==> Executing phase: 'build' > ==> Executing phase: 'install' > ==> Successfully installed superlu-dist > Fetch: 2.03s. Build: 22.54s. Total: 24.57s. > [+] > /Users/barrysmith/Src/spack/opt/spack/darwin-mojave-x86_64/clang-10.0.0-apple/superlu-dist-5.4.0-zfeg63fl3jxidb2irxucgz7nvmintbzn > ==> Installing petsc > ==> Fetching > http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.10.2.tar.gz > ######################################################################## > 100.0% > ==> Staging archive: > /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b/petsc-3.10.2.tar.gz > ==> Created stage in > /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b > ==> No patches needed for petsc > ==> Building petsc [Package] > ==> Executing phase: 'install' > ==> Error: ProcessError: Command exited with status 2: > 'make' 'MAKE_NP=8' > > 1 error found in build log: > 52 > 53 ==> 'make' 'MAKE_NP=8' > 54 makefile:15: lib/petsc/conf/petscvariables: No such file or > directory > 55 makefile:16: /lib/petsc/conf/variables: No such file or directory > 56 makefile:17: /lib/petsc/conf/rules: No such file or directory > 57 makefile:18: /lib/petsc/conf/test.common: No such file or directory > >> 58 make: *** No rule to make target `/lib/petsc/conf/test.common'. > Stop. > > See build log for details: > > /Users/barrysmith/Src/spack/var/spack/stage/petsc-3.10.2-7fmmtqrr42secdvbosssdjc5lxnohh6b/petsc-3.10.2/spack-build.out > > Then in the build log > > File > "/private/var/folders/c1/ldz_dt8n2r3dtwv_chp5pfr40000gn/T/barrysmith/spack-stage/spack-stage-hFL0xI/petsc-3.10.2/config/BuildSystem/nargs.py", > line 360, in setValue > raise ValueError('Invalid directory: '+str(dir)+' for key '+str(self.key)) > =============================================================================== > Configuring PETSc to compile on your system > > =============================================================================== > ******************************************************************************* > ERROR in COMMAND LINE ARGUMENT to ./configure > ------------------------------------------------------------------------------- > Invalid directory: /usr/include for key with-zlib-include > ******************************************************************************* > > > Apple OS doesn't come with a /usr/include > > >> On Oct 20, 2018, at 10:47 PM, Jed Brown <j...@jedbrown.org> wrote: >> >> We're currently maintaining a (somewhat clumsy and limited, albeit >> functional) package manager in the form of the --download functionality. >> What do people think of outsourcing this to Spack, which would handle >> dependency resolution and report includes/libraries to PETSc? That >> would enable reuse of installed packages between different PETSC_ARCH >> and be more reliable regarding upgrade/downgrade when switching >> branches.