Can you send corresponding logs? Satish
On Mon, 29 Oct 2018, Mark Adams via petsc-dev wrote: > I am building a fresh PETSc with GNU on Titan and I get these warnings > about incompatible pointers in calls in PlexPartition to MarMetis. > > Mark > > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c: > In function 'PetscPartitionerPartition_ParMetis': > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1461:40: > warning: passing argument 1 of 'METIS_SetDefaultOptions' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_SetDefaultOptions(options); /* initialize all > defaults */ > ^~~~~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:229:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_SetDefaultOptions(idx_t *options); > ^~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:43: > warning: passing argument 1 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > ^ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:51: > warning: passing argument 2 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > ^ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:58: > warning: passing argument 3 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > ^~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:64: > warning: passing argument 4 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > ^~~~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:72: > warning: passing argument 5 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > ^~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:84: > warning: passing argument 7 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > > ^~~~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:92: > warning: passing argument 8 of 'METIS_PartGraphRecursive' from incompatible > pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > > ^ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:116: > warning: passing argument 11 of 'METIS_PartGraphRecursive' from > incompatible pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > > ^~~~~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:125: > warning: passing argument 12 of 'METIS_PartGraphRecursive' from > incompatible pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > > ^ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > METIS_API(int) METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t > *xadj, > ^~~~~~~~~~~~~~~~~~~~~~~~ > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1465:135: > warning: passing argument 13 of 'METIS_PartGraphRecursive' from > incompatible pointer type [-Wincompatible-pointer-types] > ierr = METIS_PartGraphRecursive(&nvtxs, &ncon, xadj, adjncy, > vwgt, NULL, adjwgt, &nparts, tpwgts, ubvec, options, &edgeCut, assignment); > > ^~~~~~~~~~ > In file included from > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/parmetis.h:18:0, > from > /lustre/atlas1/geo127/proj-shared/petsc/src/dm/impls/plex/plexpartition.c:1395: > /lustre/atlas/proj-shared/geo127/petsc_titan_opt64idx_gnu_cuda/include/metis.h:199:16: > note: expected 'idx_t * {aka long int *}' but argument is of type 'PetscInt > * {aka long long int *}' > > > .......... >