It appears MUMPS uses an unprotected stdint.h file that the compilers cannot resolve. There is a big discussion of it as https://software.intel.com/en-us/forums/intel-c-compiler/topic/733929 PETSc also cannot locate this file and so works around not having it.
The strange thing is that it seems to exist at C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2019.1.144\windows\compiler\include\stdint.h I would try a test where I copied this file to petsc/include and rerun the ./configure. With any luck it will make more progress. Please send the resulting configure.log Barry > On Jul 2, 2019, at 1:08 AM, [email protected] wrote: > > Dear Barry, > Thank you very much for all your help. I have copied the metis.h file to the > directory "/cygdrive/c/metis-5.1.0/include". > and then run ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > --with-cxx='win32fe cl' --download-fblaslapack --with-debugging=0 > --download-mumps --with-mpi-dir="/cygdrive/c/Program Files/MPICH2" > --with-shared-libraries=0 --with-mpiexec='mpiexec --localonly' --useThreads=0 > --download-scalapack > --with-parmetis-include="/cygdrive/c/parmetis-4.0.3/include" > --with-parmetis-lib="/cygdrive/c/parmetis-4.0.3/libparmetis/Release/parmetis.lib > /cygdrive/c/parmetis-4.0.3/libmetis/Release/metis.lib" > --with-metis-include="/cygdrive/c/metis-5.1.0/include" > --with-metis-lib="/cygdrive/c/metis-5.1.0/libmetis/Release/metis.lib" > The problem changes as follows > > =============================================================================== > Configuring PETSc to compile on your system > =============================================================================== > =============================================================================== > > ***** WARNING: Using default optimization C flags -O2 > -QxW > You might consider manually setting > optimal optimization flags for your system with > > COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples > > > =============================================================================== > > > =============================================================================== > > ***** WARNING: Using default C++ optimization flags -O2 > -QxW -Zm200 > You might consider manually setting > optimal optimization flags for your system with > > CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for > examples > > =============================================================================== > > > =============================================================================== > > ***** WARNING: Using default FORTRAN optimization flags > -O3 -QxW > You might consider manually setting > optimal optimization flags for your system with > > FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples > > > =============================================================================== > > > =============================================================================== > > Compiling Mumps; this may take several minutes > > > =============================================================================== > > > > > ******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > ------------------------------------------------------------------------------- > Error running make on MUMPS: Could not execute "['make alllib']": > make ARITH=c mumps_lib > make[1]: Entering directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps' > if [ "./PORD/lib/" != "" ] ; then \ > cd ./PORD/lib/; \ > make CC="/cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl" CFLAGS="-MT > -wd4996 -O2 -QxW" AR="/cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe lib -a > " RANLIB="/usr/bin/true" OUTC="-o " LIBEXT=.lib; \ > fi; > make[2]: Entering directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/PORD/lib' > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c graph.c -o graph.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > graph.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c gbipart.c -o gbipart.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > gbipart.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c gbisect.c -o gbisect.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > gbisect.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c ddcreate.c -o ddcreate.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > ddcreate.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c ddbisect.c -o ddbisect.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > ddbisect.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c nestdiss.c -o nestdiss.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > nestdiss.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c multisector.c -o multisector.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > multisector.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c gelim.c -o gelim.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > gelim.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c bucket.c -o bucket.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > bucket.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c tree.c -o tree.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > tree.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c symbfac.c -o symbfac.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > symbfac.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c interface.c -o interface.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > interface.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c sort.c -o sort.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > sort.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -I../include -MT -wd4996 > -O2 -QxW -c minpriority.c -o minpriority.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > minpriority.c > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe lib -a libpord.lib graph.o > gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o multisector.o gelim.o > bucket.o tree.o symbfac.o interface.o sort.o minpriority.o > /usr/bin/true libpord.lib > make[2]: Leaving directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/PORD/lib' > if [ "./PORD/lib/" != "" ] ; then \ > cp ./PORD/lib//libpord.lib lib/libpord.lib; \ > fi; > (cd src ; make c) > make[2]: Entering directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src' > make ARITH=c mumps_lib > make[3]: Entering directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src' > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c lr_common.F -o lr_common.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c double_linked_list.F -o double_linked_list.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c ana_omp_m.F -o ana_omp_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c ana_orderings_wrappers_m.F -o ana_orderings_wrappers_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_memory_mod.F -o mumps_memory_mod.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_static_mapping.F -o mumps_static_mapping.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_sol_es.F -o mumps_sol_es.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c fac_future_niv2_mod.F -o fac_future_niv2_mod.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_comm_ibcast.F -o mumps_comm_ibcast.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_ooc_common.F -o mumps_ooc_common.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c omp_tps_common_m.F -o omp_tps_common_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c fac_asm_build_sort_index_m.F -o fac_asm_build_sort_index_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c fac_asm_build_sort_index_ELT_m.F -o > fac_asm_build_sort_index_ELT_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_l0_omp_m.F -o mumps_l0_omp_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c front_data_mgt_m.F -o front_data_mgt_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c fac_maprow_data_m.F -o fac_maprow_data_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c fac_descband_data_m.F -o fac_descband_data_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c fac_ibct_data_m.F -o fac_ibct_data_m.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c ana_orderings.F -o ana_orderings.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c ana_AMDMF.F -o ana_AMDMF.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c bcast_errors.F -o bcast_errors.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c estim_flops.F -o estim_flops.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_type_size.F -o mumps_type_size.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_type2_blocking.F -o mumps_type2_blocking.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_version.F -o mumps_version.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c tools_common.F -o tools_common.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe ifort -MT -O3 -fpp > -I/cygdrive/c/Program\ Files/MPICH2/include -Dpord -Dmetis -Dparmetis -I. > -I../include -c mumps_print_defined.F -o mumps_print_defined.o > /cygdrive/c/petsc/lib/petsc/bin/win32fe/win32fe cl -MT -wd4996 -O2 -QxW > -I/cygdrive/c/Program\ Files/MPICH2/include -I../include -DUPPPER > -I/cygdrive/c/parmetis-4.0.3/include -I/cygdrive/c/metis-5.1.0/include > -I../PORD/include/ -Dpord -Dmetis -Dparmetis -c mumps_common.c -o > mumps_common.o > cl: 命令行 warning D9002 :忽略未知选项“-QxW” > mumps_common.c > C:\Program Files > (x86)\IntelSWTools\compilers_and_libraries_2019.1.144\windows\compiler\include\stdint.h(39): > fatal error C1083: 无法打开包括文件: “../../vc/include/stdint.h”: No such file or > directory > make[3]: Leaving directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src' > make[2]: Leaving directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps/src' > make[1]: Leaving directory > '/cygdrive/c/petsc/arch-mswin-c-opt/externalpackages/git.mumps'make[3]: *** > [Makefile:295: mumps_common.o] Error 2 > make[2]: *** [Makefile:20: c] Error 2 > make[1]: *** [Makefile:40: mumps_lib] Error 2 > make: *** [Makefile:18: c] Error 2 > > > Thank you very much for all you help. > Best regards, > Bao Rong > > [email protected] > > From: Smith, Barry F. > Date: 2019-07-02 12:47 > To: [email protected] > CC: petsc-maint > Subject: Re: [petsc-maint] Problems about PETSc installation on MS/Windows > with the additional packages: MUMPS, METIS, ParMETIS, ScaLAPACK, BLAS-LAPACK > > Please send > > ls /cygdrive/c/metis-5.1.0/include > > it is unable to find the metis.h file in that directory. > > Barry > > > > On Jul 1, 2019, at 11:39 PM, rongbao--- via petsc-maint > > <[email protected]> wrote: > > > > Dear Satish, > > Thank you very much for all your help. I installed metis/parmetis with > > '/MT'. > > May be this petsc configure.log? > > Thank you very much for all you help. > > Best regards, > > Bao Rong > > > > 发件人： Balay, Satish > > 发送时间： 2019-07-02 12:00 > > 收件人： Smith, Barry F. > > 抄送： [email protected]; petsc-maint > > 主题： Re: [petsc-maint] Problems about PETSc installation on MS/Windows with > > the additional packages: MUMPS, METIS, ParMETIS, ScaLAPACK, BLAS-LAPACK > > Make sure you've installed metis/parmetis with '/MT' or equivalent compiler > > option > > > > Also its best if you can copy/paste the text from the terminal > > [instead of screenshots of the terminal] - and also send configure.log > > [or relevant log] as Barry indicated. > > > > Satish > > > > On Tue, 2 Jul 2019, Smith, Barry F. via petsc-maint wrote: > > > > > > > > Send configure.log > > > > > > > > > > On Jul 1, 2019, at 8:59 PM, [email protected] wrote: > > > > > > > > Dear PETSc Team, Barry and Satish, > > > > Thank you very much for all your help. I have tried your valuable > > > > advices. According to your valuable advices, I open” Intel 64 Visual > > > > Studio 2017 environment”, and run cygwin terminal/bash-shell mintty.exe > > > > as: c:\cygwin\bin\mintty.exe. Then I run “cd /cygdrive/c/petsc”, and > > > > then run “./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > --with-cxx='win32fe cl' --download-fblaslapack”. It shows no problem as > > > > following picture, and thank you very much for all your help. > > > > <InsertPic_.jpg> > > > > > > > > I also have another question. In fact, I want to complete PETSc > > > > installation with the following additional packages: MUMPS, METIS, > > > > ParMETIS, ScaLAPACK, BLAS-LAPACK. The recommended configuration command > > > > I obtained for PETSc is as following > > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > --with-cxx='win32fe cl' --download-fblaslapack --with-debugging=0 > > > > --download-mumps --with-mpi-dir="/cygdrive/c/Program Files/MPICH2" > > > > --with-shared-libraries=0 --with-mpiexec='mpiexec --localonly' > > > > --useThreads=0 --download-scalapack > > > > --with-parmetis-include=/home/user/parmetis-4.0.3/include > > > > --with-parmetis-lib="/home/user/libs/parmetis.lib > > > > /home/user/libs/metis.lib" > > > > --with-metis-include="/home/user/metis-5.1.0/include" > > > > --with-metis-lib=/home/user/libs/metis.lib > > > > In order to complete this PETSc installation, firstly I installed METIS > > > > and ParMETIS with VS2017 and CMake using a standard procedure. The > > > > building directories are “C:\metis-5.1.0” and “C:\parmetis-4.0.3”. > > > > <InsertPic_6118.jpg> > > > > <InsertPic_C6CE.jpg> > > > > Then according to the above recommended configuration command, I made > > > > the following modification. > > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > --with-cxx='win32fe cl' --download-fblaslapack --with-debugging=0 > > > > --download-mumps --with-mpi-dir="/cygdrive/c/Program Files/MPICH2" > > > > --with-shared-libraries=0 --with-mpiexec='mpiexec --localonly' > > > > --useThreads=0 --download-scalapack > > > > --with-parmetis-include="/cygdrive/c/parmetis-4.0.3/include" > > > > --with-parmetis-lib="/cygdrive/c/parmetis-4.0.3/libparmetis/Release/parmetis.lib > > > > /cygdrive/c/parmetis-4.0.3/libmetis/Release/metis.lib" > > > > --with-metis-include="/cygdrive/c/metis-5.1.0/include" > > > > --with-metis-lib="/cygdrive/c/metis-5.1.0/libmetis/Release/metis.lib" > > > > Finally, I run this modified configuration command, and there are some > > > > problems as > > > > <InsertPic_277A.jpg> > > > > > > > > I don’t not my installation steps and understanding is right or not? > > > > Would you kindly please tell me the correct installation steps or > > > > suggestions? > > > > Thank you very much for all you help. > > > > Best regards, > > > > Bao Rong > > > > **************************************************** > > > > Bao Rong, Ph.D. > > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences > > > > ADD: Institute of Plasma Physics, 350 Shushanhu Road，Hefei，Anhui，230031 > > > > Email: [email protected]; [email protected] > > > > ***************************************************** > > > > > > > > > > > > 发件人： Balay, Satish > > > > 发送时间： 2019-07-01 01:19 > > > > 收件人： [email protected] > > > > 抄送： petsc-maint; Smith, Barry F. > > > > 主题： Re: Re: [petsc-maint] Problems about PETSc installation on > > > > MS/Windows > > > > Try: > > > > 1. reboot the machine > > > > [do not start any cygwin stuff - like mintty or bash or anything] > > > > 2. re-run cygwin setup.exe to completion. > > > > 3. redo the petsc build [via the procedure below] > > > > > > > > Satish > > > > > > > > On Mon, 1 Jul 2019, [email protected] wrote: > > > > > > > > > Dear Barry and Satish, > > > > > Thank you very much for all your help. I have tried all advices. Only > > > > > the following steps seem to be hopeful, although there are still > > > > > problems. > > > > > (1) Start -> Programs -> Intel Parallel Studio XE 2019 -> Command > > > > > Prompt with Intel Compiler 19.0 Update 1 -> Intel 64 Visual Studio > > > > > 2017 environment. run cygwin terminal/bash-shell mintty.exe by using > > > > > “c:\cygwin\bin\mintty.exe”. > > > > > I can obtain the following cygwin terminal/bash-shell > > > > > (2) run “/usr/bin/bash --login” in the cygwin terminal/bash-shell as > > > > > Then run “cd /cygdrive/c/petsc” and “./configure --with-cc='win32fe > > > > > cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' > > > > > --download-fblaslapack”. There are some problems as > > > > > > > > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > > > > > details): > > > > > ------------------------------------------------------------------------------- > > > > > Error running make on > > > > > /cygdrive/c/petsc/arch-mswin-c-debug/externalpackages/fblaslapack-3.4.2: > > > > > Could not execute "['cd > > > > > /cygdrive/c/petsc/arch-mswin-c-debug/externalpackages/fblaslapack-3.4.2 > > > > > && make -f tmpmakefile cleanblaslapck cleanlib && make -f > > > > > tmpmakefile']": > > > > > /usr/bin/rm -f */*.o > > > > > /usr/bin/rm -f ./*.a ./*.lib 0 [main] make 9498 > > > > > child_info_fork::abort: \??\C:\cygwin\bin\cygiconv-2.dll: Loaded to > > > > > different address: parent(0x600000) != child(0x440000) > > > > > make: fork: Resource temporarily unavailable > > > > > 0 [main] make 9499 child_info_fork::abort: > > > > > \??\C:\cygwin\bin\cygiconv-2.dll: Loaded to different address: > > > > > parent(0x600000) != child(0x7A0000) > > > > > make: fork: Resource temporarily unavailable > > > > > (3) I also run “/usr/bin/ls /usr/bin”, and obtain some informations, > > > > > shown as in the appendix. > > > > > > > > > > I don't know how to solve these problems. Would you kindly please > > > > > tell me the mistakes? > > > > > Thank you very much for all you help. > > > > > Best regards, > > > > > Bao Rong > > > > > **************************************************** > > > > > Bao Rong, Ph.D. > > > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences > > > > > ADD: Institute of Plasma Physics, 350 Shushanhu > > > > > Road，Hefei，Anhui，230031 > > > > > Email: [email protected]; [email protected] > > > > > ***************************************************** > > > > > > > > > > From: Balay, Satish > > > > > Date: 2019-06-30 14:02 > > > > > To: Smith, Barry F. > > > > > CC: [email protected]; petsc-maint > > > > > Subject: Re: [petsc-maint] Problems about PETSc installation on > > > > > MS/Windows > > > > > After starting mintty.exe - try: > > > > > > > > > > /usr/bin/bash --login > > > > > [and then ./configure ...] > > > > > > > > > > Also - what do you have for: > > > > > > > > > > /usr/bin/ls /usr/bin > > > > > > > > > > Satish > > > > > > > > > > On Sun, 30 Jun 2019, Smith, Barry F. via petsc-maint wrote: > > > > > > > > > > > > > > > > > A quick inspection seems to indicate you are doing things > > > > > > correctly. > > > > > > > > > > > > The message form ifort is fine. It just indicates no files were > > > > > > passed to it to compile. > > > > > > > > > > > > Regarding the issue with not finding python. In your original > > > > > > shell you confirmed that python ran. But once you did > > > > > > > > > > > > Start -> Programs -> Intel Parallel Studio XE 2019 -> Command > > > > > > Prompt with Intel Compiler 19.0 Update 1 -> Intel 64 Visual Studio > > > > > > 2017 environment. > > > > > > run cygwin terminal/bash-shell mintty.exe > > > > > > > > > > > > you did not check again that python worked. Please run python > > > > > > from this shell and confirm if it works. My guess is that it does > > > > > > not work. Which would explain why it was unable to run the > > > > > > ./configure If python is not found you can try to run with the > > > > > > full path of python. > > > > > > > > > > > > c:\cygwin\bin\python > > > > > > > > > > > > or maybe > > > > > > > > > > > > c:\cygwin\bin\python.exe > > > > > > > > > > > > or maybe > > > > > > > > > > > > /cydrive/c/Python27/python.exe > > > > > > > > > > > > or maybe something else, does either of those work? If you can run > > > > > > ./configure using the full python path, for example, > > > > > > > > > > > > c:\cygwin\bin\python ./configure --with-cc='win32fe cl' > > > > > > --with-fc='win32fe ifort' --with-cxx='win32fe cl' > > > > > > --download-fblaslapack > > > > > > > > > > > > does that work? > > > > > > > > > > > > > > > > > > > > > > > > Barry > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > On Jun 29, 2019, at 8:43 PM, [email protected] wrote: > > > > > > > > > > > > > > Dear Barry, > > > > > > > Thank you very much for all you help. I have changed the > > > > > > > PETSC_DIR as “c/petsc”. > > > > > > > I have done the following two methods, but all of them have > > > > > > > problems. > > > > > > > (1) The first method > > > > > > > I open Cygwin Terminal directly, and run “python”. It shows > > > > > > > “Python 2.7.16 (default, Mar 20 2019, 12:29:04) [GCC 7.4.0] on > > > > > > > Cygwin Type "help", "copyright", "credits" or "license" for more > > > > > > > information.” > > > > > > > Then I run “python ./configure --with-cc='win32fe cl' > > > > > > > --with-fc='win32fe ifort' --with-cxx='win32fe cl' > > > > > > > --download-fblaslapack” or “python cygdrive/c/petsc/configure > > > > > > > --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > > > > --with-cxx='win32fe cl' --download-fblaslapack”. There are all > > > > > > > “SyntaxError: invalid syntax”. > > > > > > > <InsertPic_.jpg> > > > > > > > (2) The second method > > > > > > > I open” Intel 64 Visual Studio 2017 environment”, and run cygwin > > > > > > > terminal/bash-shell mintty.exe as: c:\cygwin\bin\mintty.exe. Then > > > > > > > run “python”, it shows “bash: python: command not found”. > > > > > > > <InsertPic_.png> > > > > > > > I also run “cl” and “ifort”. There is an error “ifort: command > > > > > > > line error: no files specified; for help type "ifort /help”. > > > > > > > <InsertPic_3D20.png> > > > > > > > I run “cd /cygdrive/c/petsc”, and then run “python ./configure > > > > > > > --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > > > > --with-cxx='win32fe cl' --download-fblaslapack > > > > > > > ”. It shows “bash: python: command not found”. > > > > > > > <InsertPic_881C.jpg> > > > > > > > I don't know how to solve these problems. Would you kindly please > > > > > > > tell me the mistakes? > > > > > > > Thank you very much for all you help. > > > > > > > Best regards, > > > > > > > Bao Rong > > > > > > > **************************************************** > > > > > > > Bao Rong, Ph.D. > > > > > > > Hefei Institutes of Physical Science, Chinese Academy of Sciences > > > > > > > ADD: Institute of Plasma Physics, 350 Shushanhu > > > > > > > Road，Hefei，Anhui，230031 > > > > > > > Email: [email protected]; [email protected] > > > > > > > ***************************************************** > > > > > > > > > > > > > > From: Smith, Barry F. > > > > > > > Date: 2019-06-29 23:07 > > > > > > > To: [email protected] > > > > > > > CC: petsc-maint > > > > > > > Subject: Re: [petsc-maint] Problems about PETSc installation on > > > > > > > MS/Windows > > > > > > > > > > > > > > Two things to do > > > > > > > > > > > > > > 1) don't have a space and "" in your PETSC_DIR so change the > > > > > > > directory name to have no spaces. > > > > > > > > > > > > > > 2) Run > > > > > > > > > > > > > > python ./configure --with-cc='win32fe cl' --with-fc='win32fe > > > > > > > ifort' --with-cxx='win32fe cl' --download-fblaslapack > > > > > > > > > > > > > > Good luck, > > > > > > > > > > > > > > Barry > > > > > > > > > > > > > > > > > > > > > > > > > > > > > On Jun 29, 2019, at 9:06 AM, rongbao--- via petsc-maint > > > > > > > > <[email protected]> wrote: > > > > > > > > > > > > > > > > Dear PETSc Team, > > > > > > > > I am a beginner of PETSc, and want to use PETSc on MS/Windows. > > > > > > > > I use win7, Visual Studio 2017, Intel Parallel Studio XE 2019, > > > > > > > > and petsc-3.11.2. According to Installation Guide > > > > > > > > (https://www.mcs.anl.gov/petsc/documentation/installation.html#windows), > > > > > > > > my Installation steps are as following. > > > > > > > > (1) I download and install Cygwin (x86) from > > > > > > > > http://www.cygwin.com > > > > > > > > (2) Remove Cygwin link.exe: [from cygwin terminal/bash-shell]: > > > > > > > > mv /usr/bin/link.exe /usr/bin/link-cygwin.exe > > > > > > > > <InsertPic_.jpg> > > > > > > > > (3) Setup cygwin terminal/bash-shell with Working Compilers: > > > > > > > > (3.1) Start -> Programs -> Intel Parallel Studio XE 2019 -> > > > > > > > > Command Prompt with Intel Compiler 19.0 Update 1 -> Intel 64 > > > > > > > > Visual Studio 2017 environment. > > > > > > > > run cygwin terminal/bash-shell mintty.exe as: > > > > > > > > c:\cygwin\bin\mintty.exe > > > > > > > > <InsertPic_98D6.jpg> > > > > > > > > (3.2) verify if the compilers are useable [by running cl, ifort > > > > > > > > in this cygwin terminal/bash-shell] > > > > > > > > <InsertPic_7165.jpg> > > > > > > > > There is an error as “ifort: command line error: no files > > > > > > > > specified”. > > > > > > > > (4) run configure with win32fe and then build the libraries > > > > > > > > with make [as per the usual instructions] > > > > > > > > cd /cygdrive/g/"CAE soft"/source/petsc-3.11.2 > > > > > > > > ./configure --with-cc='win32fe cl' --with-fc='win32fe ifort' > > > > > > > > --with-cxx='win32fe cl' --download-fblaslapack > > > > > > > > <InsertPic_890E.jpg> > > > > > > > > There is an error as “/usr/bin/env: 'python': No such file or > > > > > > > > directory”. But When I installed cygwin, I chose to install > > > > > > > > Python as > > > > > > > > <InsertPic_.png> > > > > > > > > Did I make any mistakes? I don't know how to solve these > > > > > > > > problems. Would you kindly please tell me where the mistake is, > > > > > > > > and help me complete the installation? > > > > > > > > Thank you very much for all you help. > > > > > > > > Best regards, > > > > > > > > Bao Rong > > > > > > > > **************************************************** > > > > > > > > Bao Rong, Ph.D. > > > > > > > > Hefei Institutes of Physical Science, Chinese Academy of > > > > > > > > Sciences > > > > > > > > ADD: Institute of Plasma Physics, 350 Shushanhu > > > > > > > > Road，Hefei，Anhui，230031 > > > > > > > > Email: [email protected]; [email protected] > > > > > > > > ***************************************************** > > > > > > > > <Thank you very nuch for your help.pdf> > > > > > > > > > > > > > > <Thank you very much for all your help.doc> > > > > > > > > > > > > > > > > > > > > > <PETSc installation with the additional packages.doc> > > > > > > > > <configure.log> > > <configure.log>
