Fix at https://gitlab.com/petsc/petsc/-/merge_requests/4402
thanks, Satish On Sat, 2 Oct 2021, Jacob Faibussowitsch wrote: > Unrelated to the below (still reading the configure.log) but it looks like > there’s a bug in the cuda compiler search: > > TESTING: checkCUDACompiler from > config.setCompilers(/builddir/build/BUILD/petsc-3.16.0/petsc-3.16.0/config/BuildSystem/config/setCompilers.py:862) > Locate a functional CUDA compiler > Checking for program /usr/bin/nvcc...not found > Checking for program /bin/nvcc...not found > Checking for program /usr/sbin/nvcc...not found > Checking for program /sbin/nvcc...not found > Checking for program /usr/local/sbin/nvcc...not found > Checking for program > /builddir/build/BUILD/petsc-3.16.0/petsc-3.16.0/lib/petsc/bin/win32fe/nvcc...not > found > Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found > Checking for program > /builddir/build/BUILD/petsc-3.16.0/petsc-3.16.0/lib/petsc/bin/win32fe/nvcc...not > found > Unable to find programs ['nvcc'] providing listing of the specific search > path > Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: can only > concatenate str (not "builtin_function_or_method") to str > Checking for program /usr/local/cuda/bin/nvcc...not found > Checking for program > /builddir/build/BUILD/petsc-3.16.0/petsc-3.16.0/lib/petsc/bin/win32fe/nvcc...not > found > Unable to find programs ['nvcc'] providing listing of the specific search > path > Warning accessing /usr/local/cuda/bin gives errors: can only > concatenate str (not "builtin_function_or_method") to str > > > Best regards, > > Jacob Faibussowitsch > (Jacob Fai - booss - oh - vitch) > > > On Oct 2, 2021, at 08:18, Stefano Zampini <stefano.zamp...@gmail.com> wrote: > > > > I knew this was coming.... > > https://gitlab.com/petsc/petsc/-/issues/997 > > <https://gitlab.com/petsc/petsc/-/issues/997> > > > > Il Sab 2 Ott 2021, 15:48 Antonio T. sagitter <sagit...@fedoraproject.org > > <mailto:sagit...@fedoraproject.org>> ha scritto: > > Hi all. > > > > In PETSc-3.16.0, the linker is not working because of these undefined > > references (see https://pastebin.com/izGTfmMp > > <https://pastebin.com/izGTfmMp>): > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `operator > > delete(void*, unsigned long)' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `__cxa_rethrow' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `__gxx_personality_v0' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `operator > > new(unsigned long)' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `std::__throw_bad_alloc()' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `std::terminate()' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `std::__throw_bad_array_new_length()' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `typeinfo > > for std::exception' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `__cxa_begin_catch' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `__cxa_end_catch' > > > > /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to > > `std::__throw_length_error(char const*)' > > > > collect2: error: ld returned 1 exit status > > > > There are also > > > > $ ldd -r build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so' > > Start: shell > > > > linux-vdso.so.1 (0x00007fffbf347000) > > > > libsuperlu.so.5.2 => /lib64/libsuperlu.so.5.2 (0x00007f00dad0c000) > > > > libflexiblas.so.3 => /lib64/libflexiblas.so.3 (0x00007f00da95a000) > > > > libcgns.so.4.2 => /lib64/libcgns.so.4.2 (0x00007f00da873000) > > > > libhdf5.so.103 => /lib64/libhdf5.so.103 (0x00007f00da4d8000) > > > > libm.so.6 => /lib64/libm.so.6 (0x00007f00da3f8000) > > > > libX11.so.6 => /lib64/libX11.so.6 (0x00007f00da2ae000) > > > > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f00da294000) > > > > libc.so.6 => /lib64/libc.so.6 (0x00007f00da08b000) > > > > libgfortran.so.5 => /lib64/libgfortran.so.5 (0x00007f00d9dde000) > > > > libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007f00d9d94000) > > > > /lib64/ld-linux-x86-64.so.2 (0x00007f00dc18b000) > > > > libsz.so.2 => /lib64/libsz.so.2 (0x00007f00d9d8a000) > > > > libz.so.1 => /lib64/libz.so.1 (0x00007f00d9d6e000) > > > > libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f00d9d43000) > > > > libXau.so.6 => /lib64/libXau.so.6 (0x00007f00d9d3d000) > > > > undefined symbol: _ZTISt9exception > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: __gxx_personality_v0 > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: _ZdlPvm > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: __cxa_rethrow > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: _Znwm > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: _ZSt17__throw_bad_allocv > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: _ZSt9terminatev > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: _ZSt28__throw_bad_array_new_lengthv > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: __cxa_begin_catch > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: __cxa_end_catch > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > undefined symbol: _ZSt20__throw_length_errorPKc > > (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so) > > > > > > > > I'm attaching configure.log and make.log > > > > -- > > --- > > Antonio Trande > > Fedora Project > > mailto: sagit...@fedoraproject.org <mailto:sagit...@fedoraproject.org> > > GPG key: 0x29FBC85D7A51CC2F > > GPG key server: https://keyserver1.pgp.com/ <https://keyserver1.pgp.com/> > >
