Works for me [per instructions in balay/update-spock, config/examples/arch-olcf-spock.py] with main - without these additional options
I'll go ahead and merge in balay/update-spock Satish ----- 1009 git fetch -p 1015 module load emacs 1016 module load rocm/4.3.0 1018 git reset --hard 1019 git checkout origin/main 1020 git merge origin/balay/update-spock 1021 ./config/examples/arch-olcf-spock.py && make [balay@login2.spock petsc]$ MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0 MPICH_GPU_SUPPORT_ENABLED=1 MPICH_SMP_SINGLE_COPY_MODE=CMA make check Running check examples to verify correct installation Using PETSC_DIR=/autofs/nccs-svm1_home1/balay/petsc and PETSC_ARCH=arch-olcf-spock C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes C/C++ example src/snes/tutorials/ex3k run successfully with kokkos-kernels *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /ccs/home/balay/petsc/src/snes/tutorials ex5f ********************************************************* ftn -fPIC -fPIC -I/autofs/nccs-svm1_home1/balay/petsc/include -I/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/include -I/opt/rocm-4.3.0/include ex5f.F90 -Wl,-rpath,/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -L/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -Wl,-rpath,/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -L/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -Wl,-rpath,/opt/rocm-4.3.0/lib -L/opt/rocm-4.3.0/lib -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/gtl/lib -L/opt/cray/pe/mpich/8.1.10/gtl/lib -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib64 -L/opt/cray/pe/gcc/8.1.0/snos/lib64 -Wl,-rpath,/opt/cray/pe/libsci/21.08.1.2/CRAY/9.0/x86_64/lib -L/opt/cray/pe/libsci/21.08.1.2/CRAY/9.0/x86_64/lib -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib -L/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.14/lib -L/opt/cray/pe/pmi/6 .0.14/li b -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce/x86_64/lib -L/opt/cray/pe/cce/12.0.3/cce/x86_64/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux -L/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 -L/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 -Wl,-rpath,/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib -L/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib -lpetsc -lmagma -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lrocrand -lamdhip64 -lstdc++ -ldl -lmpi_gtl_hsa -lmpifort_cray -lmpi_cray -ldsmml -lpmi -lpmi2 -lxpmem -lpgas-shmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread -lgcc_eh -lm -lclang_rt.craypg o-x86_64 -lclang_rt.builtins-x86_64 -lquadmath -lstdc++ -ldl -lmpi_gtl_hsa -o ex5f/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: warning: alignment 128 of symbol `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in /tmp/pe_202599/ex5f_1.o /opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: warning: alignment 64 of symbol `$data_init$iso_c_binding_' in /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in /tmp/pe_202599/ex5f_1.o Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process Completed test examples [balay@login2.spock petsc]$ On Fri, 10 Dec 2021, Mark Adams wrote: > FWIW, here is my current status. > > 08:08 main= spock:/gpfs/alpine/csc314/scratch/adams/petsc$ make > PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc > PETSC_ARCH=arch-olcf-spock check > Running check examples to verify correct installation > Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and > PETSC_ARCH=arch-olcf-spock > Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process > See http://www.mcs.anl.gov/petsc/documentation/faq.html > lid velocity = 0.0016, prandtl # = 1., grashof # = 1. > 0 KSP Residual norm 0.0406612 > 1 KSP Residual norm 0.036923 > 2 KSP Residual norm 0.0191849 > 3 KSP Residual norm 0.00201589 > 4 KSP Residual norm 0.000376045 > 5 KSP Residual norm 4.2974e-05 > 6 KSP Residual norm 5.96585e-06 > 7 KSP Residual norm 4.5398e-07 > 8 KSP Residual norm 6.30474e-08 > 9 KSP Residual norm 5.55518e-09 > 10 KSP Residual norm 6.180e-10 > 11 KSP Residual norm 6.211e-11 > Linear solve converged due to CONVERGED_RTOL iterations 11 > 0 KSP Residual norm 3.32845e-06 > 1 KSP Residual norm 9.0003e-07 > 2 KSP Residual norm 1.32594e-07 > 3 KSP Residual norm 1.49857e-08 > 4 KSP Residual norm 1.31887e-09 > 5 KSP Residual norm 2.105e-10 > 6 KSP Residual norm 2.827e-11 > 7 KSP Residual norm < 1.e-11 > 8 KSP Residual norm < 1.e-11 > 9 KSP Residual norm < 1.e-11 > 10 KSP Residual norm < 1.e-11 > Linear solve converged due to CONVERGED_RTOL iterations 10 > Number of SNES iterations = 2 > Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes > See http://www.mcs.anl.gov/petsc/documentation/faq.html > lid velocity = 0.0016, prandtl # = 1., grashof # = 1. > 0 KSP Residual norm 0.0406612 > 1 KSP Residual norm 0.0281101 > 2 KSP Residual norm 0.00773873 > 3 KSP Residual norm 0.00165731 > 4 KSP Residual norm 0.000395614 > 5 KSP Residual norm 8.67655e-05 > 6 KSP Residual norm 1.69495e-05 > 7 KSP Residual norm 3.70051e-06 > 8 KSP Residual norm 5.97067e-07 > 9 KSP Residual norm 1.02242e-07 > 10 KSP Residual norm 1.75727e-08 > 11 KSP Residual norm 3.84826e-09 > 12 KSP Residual norm 6.414e-10 > 13 KSP Residual norm 1.380e-10 > Linear solve converged due to CONVERGED_RTOL iterations 13 > 0 KSP Residual norm 3.32846e-06 > 1 KSP Residual norm 8.99139e-07 > 2 KSP Residual norm 1.72893e-07 > 3 KSP Residual norm 3.733e-08 > 4 KSP Residual norm 6.67427e-09 > 5 KSP Residual norm 1.22785e-09 > 6 KSP Residual norm 2.551e-10 > 7 KSP Residual norm 5.458e-11 > 8 KSP Residual norm 1.050e-11 > 9 KSP Residual norm < 1.e-11 > 10 KSP Residual norm < 1.e-11 > 11 KSP Residual norm < 1.e-11 > 12 KSP Residual norm < 1.e-11 > Linear solve converged due to CONVERGED_RTOL iterations 12 > Number of SNES iterations = 2 > 3,5c3,14 > < 1 SNES Function norm 4.12227e-06 > < 2 SNES Function norm 6.098e-11 > < Number of SNES iterations = 2 > --- > > 0 KSP Residual norm 0.0406612 > > 1 KSP Residual norm 0.21263 > > 2 KSP Residual norm 1.09192 > > 3 KSP Residual norm 6.9087 > > 4 KSP Residual norm 23.4292 > > 5 KSP Residual norm 57.7558 > > 6 KSP Residual norm 118.076 > > 7 KSP Residual norm 213.527 > > 8 KSP Residual norm 354.101 > > 9 KSP Residual norm 550.58 > > Linear solve did not converge due to DIVERGED_DTOL iterations 9 > > Number of SNES iterations = 0 > /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials > Possible problem with ex19 running with hypre, diffs above > ========================================= > gmake[3]: [makefile:115: runex3k_kokkos] Error 134 (ignored) > 21,25c21,26 > < 1 SNES Function norm 2.952582418265e-01 > < 2 SNES Function norm 4.502293658739e-04 > < 3 SNES Function norm 1.389665806646e-09 > < Number of SNES iterations = 3 > < Norm of error 1.49752e-10 Iterations 3 > --- > > Memory access fault by GPU node-4 (Agent handle: 0xb08c90) on address > 0xe17000. Reason: Page not present or supervisor privilege. > > Memory access fault by GPU node-5 (Agent handle: 0xb0d3c0) on address > 0xe11000. Reason: Page not present or supervisor privilege. > > srun: error: spock25: task 0: Aborted > > srun: launch/slurm: _step_signal: Terminating StepId=304034.3 > > slurmstepd: error: *** STEP 304034.3 ON spock25 CANCELLED AT > 2021-12-10T08:08:40 *** > > srun: error: spock25: task 1: Aborted (core dumped) > /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials > Possible problem with ex3k running with kokkos-kernels, diffs above > ========================================= > *******************Error detected during compile or link!******************* > See http://www.mcs.anl.gov/petsc/documentation/faq.html > /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f > ********************************************************* > ftn -fPIC -fPIC -I/gpfs/alpine/csc314/scratch/adams/petsc/include > -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-olcf-spock/include > -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray/include > -I/opt/rocm-4.3.0/include ex5f.F90 > -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-olcf-spock/lib > -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-olcf-spock/lib > -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray/lib > -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray/lib > -Wl,-rpath,/opt/rocm-4.3.0/lib -L/opt/rocm-4.3.0/lib > -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/gtl/lib > -L/opt/cray/pe/mpich/8.1.10/gtl/lib > -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib64 > -L/opt/cray/pe/gcc/8.1.0/snos/lib64 -Wl,-rpath,/opt/cray/pe/libsci/ > 21.08.1.2/CRAY/9.0/x86_64/lib -L/opt/cray/pe/libsci/ > 21.08.1.2/CRAY/9.0/x86_64/lib > -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib > -L/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib > -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib > -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.14/lib > -L/opt/cray/pe/pmi/6.0.14/lib > -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce/x86_64/lib > -L/opt/cray/pe/cce/12.0.3/cce/x86_64/lib > -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 > -L/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 > -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux > -L/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux > -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > -L/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 > -Wl,-rpath,/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib > -L/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib > -lpetsc -lHYPRE -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse > -lhipblas -lrocsparse -lrocsolver -lrocblas -lrocrand -lamdhip64 -lstdc++ > -ldl -lmpi_gtl_hsa -lmpifort_cray -lmpi_cray -ldsmml -lpmi -lpmi2 -lxpmem > -lpgas-shmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran > -lpthread -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 > -lquadmath -lstdc++ -ldl -lmpi_gtl_hsa -o ex5f > /opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > warning: alignment 128 of symbol > `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in > /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in > /tmp/pe_46424/ex5f_1.o > /opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: > warning: alignment 64 of symbol `$data_init$iso_c_binding_' in > /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in > /tmp/pe_46424/ex5f_1.o > Possible error running Fortran example src/snes/tutorials/ex5f with 1 MPI > process > See http://www.mcs.anl.gov/petsc/documentation/faq.html > 0 KSP Residual norm < 1.e-11 > Linear solve converged due to CONVERGED_ATOL iterations 0 > > On Fri, Dec 10, 2021 at 8:07 AM Mark Adams <mfad...@lbl.gov> wrote: > > > I am trying to get Spock working (again) and am having problems. > > > > * make check seems to fail but it is hard to see what is going on. Maybe > > we should start here, but let me continue. > > > > * GAMG seems to work on the CPU > > > > * I have this for configuring with Kokkos. I am guessing these versions > > are out of data. What is current practice: > > '--with-kokkos-hip-arch=VEGA908', > > '--download-kokkos-commit=3.4.01', > > '--download-kokkos-kernels-commit=3.4.01', > > > > * Should I hold off (and tell my eager user to do same)? > > > > Thanks, > > Mark > > >
