After typing --with-cusp=1 and --with-thrust=1 library was compiled successfully but when I want to make tests i got following error: What could be the reason of that?
I have GTX 480 with drivers ver. 260 Ubuntu 10.10 32bit system with 2GB ram. Core duo processor 2.2GHz. Test.log: Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] VecCUDACopyFromGPU line 188 src/vec/vec/impls/seq/seqcuda/veccuda.cu [0]PETSC ERROR: [0] VecGetArray line 226 src/vec/vec/impls/mpi//home/kuba/External/petsc-dev/include/private/vecimpl.h [0]PETSC ERROR: [0] VecCreateGhostWithArray line 581 src/vec/vec/impls/mpi/pbvec.c [0]PETSC ERROR: [0] VecCreateGhost line 661 src/vec/vec/impls/mpi/pbvec.c [0]PETSC ERROR: [0] MatFDColoringCreate_SeqAIJ line 21 src/mat/impls/aij/seq/fdaij.c [0]PETSC ERROR: [0] MatFDColoringCreate line 376 src/mat/matfd/fdmatrix.c [0]PETSC ERROR: [0] DMMGSetSNES line 562 src/snes/utils/damgsnes.c [0]PETSC ERROR: [0] DMMGSetSNESLocal_Private line 933 src/snes/utils/damgsnes.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development HG revision: 488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16 2010 +0100 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex19 on a arch-linu named desktop by kuba Fri Dec 10 08:36:02 2010 [0]PETSC ERROR: Libraries linked from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib [0]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010 [0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1 --with-debug=no --with-cusp=1 --with-thrust=1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1) Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html [0]PETSC ERROR: [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrindor see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [1]PETSC ERROR: likely location of problem given in stack below [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] VecCUDACopyFromGPU line 188 src/vec/vec/impls/seq/seqcuda/veccuda.cu [0]PETSC ERROR: [0] VecGetArray line 226 src/vec/vec/impls/mpi//home/kuba/External/petsc-dev/include/private/vecimpl.h [0]PETSC ERROR: [0] VecCreateGhostWithArray line 581 src/vec/vec/impls/mpi/pbvec.c [0]PETSC ERROR: [0] VecCreateGhost line 661 src/vec/vec/impls/mpi/pbvec.c [0]PETSC ERROR: [0] MatFDColoringCreate_MPIAIJ line 24 src/mat/impls/aij/mpi/fdmpiaij.c [0]PETSC ERROR: [0] MatFDColoringCreate line 376 src/mat/matfd/fdmatrix.c [0]PETSC ERROR: [0] DMMGSetSNES line 562 src/snes/utils/damgsnes.c [0]PETSC ERROR: [0] DMMGSetSNESLocal_Private line 933 src/snes/utils/damgsnes.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development HG revision: 488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16 2010 +0100 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex19 on a arch-linu named desktop by kuba Fri Dec 10 08:36:03 2010 [0]PETSC ERROR: Libraries linked from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib [0]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010 [0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1 --with-debug=no --with-cusp=1 --with-thrust=1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [1]PETSC ERROR: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 Note: The EXACT line numbers in the stack are not available, [1]PETSC ERROR: INSTEAD the line number of the start of the function [1]PETSC ERROR: is given. [1]PETSC ERROR: [1] VecCUDACopyFromGPU line 188 src/vec/vec/impls/seq/seqcuda/veccuda.cu [1]PETSC ERROR: [1] VecGetArray line 226 src/vec/vec/impls/mpi//home/kuba/External/petsc-dev/include/private/vecimpl.h [1]PETSC ERROR: [1] VecCreateGhostWithArray line 581 src/vec/vec/impls/mpi/pbvec.c [1]PETSC ERROR: [1] VecCreateGhost line 661 src/vec/vec/impls/mpi/pbvec.c [1]PETSC ERROR: [1] MatFDColoringCreate_MPIAIJ line 24 src/mat/impls/aij/mpi/fdmpiaij.c [1]PETSC ERROR: [1] MatFDColoringCreate line 376 src/mat/matfd/fdmatrix.c [1]PETSC ERROR: [1] DMMGSetSNES line 562 src/snes/utils/damgsnes.c [1]PETSC ERROR: [1] DMMGSetSNESLocal_Private line 933 src/snes/utils/damgsnes.c [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Signal received! [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Development HG revision: 488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16 2010 +0100 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: ./ex19 on a arch-linu named desktop by kuba Fri Dec 10 08:36:03 2010 [1]PETSC ERROR: Libraries linked from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib [1]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010 [1]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1 --with-debug=no --with-cusp=1 --with-thrust=1 [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 [cli_1]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1) Error running Fortran example src/snes/examples/tutorials/ex5f with 1 MPI process See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] VecCUDACopyFromGPU line 188 src/vec/vec/impls/seq/seqcuda/veccuda.cu [0]PETSC ERROR: [0] VecGetArray line 226 src/vec/vec/interface/ftn-custom//home/kuba/External/petsc-dev/include/private/vecimpl.h [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development HG revision: 488e1fcaa13db132861c12416293551e6e00b14e HG Date: Thu Dec 09 20:23:16 2010 +0100 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex5f on a arch-linu named desktop by kuba Fri Dec 10 08:36:09 2010 [0]PETSC ERROR: Libraries linked from /home/kuba/External/petsc-dev/arch-linux-gnu-c-debug/lib [0]PETSC ERROR: Configure run at Fri Dec 10 08:05:40 2010 [0]PETSC ERROR: Configure options --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=1 --download-mpich=1 --with-cuda=1 --with-debug=no --with-cusp=1 --with-thrust=1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1) Completed test examples Dnia 2010-12-10, pi? o godzinie 00:38 +0100, Jed Brown pisze: > On Fri, Dec 10, 2010 at 00:07, Jakub Pola <jakub.pola at gmail.com> > wrote: > I downloaded Petsc 3.1.0 as well as thrust 1.4.0 and cusp > 0.2.0 > > As I said before, you need petsc-dev for this, CUDA support is not in > 3.1. > > > http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html#Obtaining
