The GCR algorithm computes the residual and hence the residual norm 
EXPLICITLY as part of the solution process, it does not use the recursive 
formula that FGMES uses. I "think" the use of the recursive formula is why 
FGMRES is cheaper than GCR (and hence much more commonly used). 

   Barry


On Dec 21, 2010, at 2:46 PM, Vijay S. Mahadevan wrote:

>> Yes but look at the true residual norm it is huge and indicates the residual 
>> is not really getting small.
> Ah yes. I was reading the output wrongly. Thanks for pointing that
> out. So then it is quite possible that my preconditioner is terrible
> for this problem.
> 
> Curiously with GCR, the true residual does converge.
> 
> 62 KSP Residual norm 6.845396874593e-10
>   62 KSP preconditioned resid norm 6.845396874593e-10 true resid norm
> 6.845396874593e-10 ||Ae||/||Ax|| 1.063128003731e+00
>   63 KSP preconditioned resid norm 4.617426258215e-10 true resid norm
> 4.617426258215e-10 ||Ae||/||Ax|| 9.425403350509e-01
> 63 KSP Residual norm 4.617426258215e-10
>   63 KSP preconditioned resid norm 4.617426258215e-10 true resid norm
> 4.617426258215e-10 ||Ae||/||Ax|| 9.425403350509e-01
>   64 KSP preconditioned resid norm 3.659090331422e-10 true resid norm
> 3.659090331422e-10 ||Ae||/||Ax|| 1.044433624917e+00
> 64 KSP Residual norm 3.659090331422e-10
>   64 KSP preconditioned resid norm 3.659090331422e-10 true resid norm
> 3.659090331422e-10 ||Ae||/||Ax|| 1.044433624917e+00
>   65 KSP preconditioned resid norm 2.457005532004e-10 true resid norm
> 2.457005532004e-10 ||Ae||/||Ax|| 9.250757590415e-01
> 65 KSP Residual norm 2.457005532004e-10
>   65 KSP preconditioned resid norm 2.457005532004e-10 true resid norm
> 2.457005532004e-10 ||Ae||/||Ax|| 9.250757590415e-01
>   66 KSP preconditioned resid norm 1.765446010945e-10 true resid norm
> 1.765446010945e-10 ||Ae||/||Ax|| 9.880804659179e-01
> 66 KSP Residual norm 1.765446010945e-10
>   66 KSP preconditioned resid norm 1.765446010945e-10 true resid norm
> 1.765446010945e-10 ||Ae||/||Ax|| 9.880804659179e-01
> 
> Jed, with modified gram schmidt procedure, fgmres yields the
> following, which looks like the same as before:
> 
> 49 KSP Residual norm 2.426160176080e-08
>   49 KSP preconditioned resid norm 2.426160176080e-08 true resid norm
> 1.864897210364e+02 ||Ae||/||Ax|| 2.696456942624e+02
>   50 KSP preconditioned resid norm 1.864914790828e+02 true resid norm
> 1.864914790828e+02 ||Ae||/||Ax|| 2.798875072987e+02
> 50 KSP Residual norm 1.864914790828e+02
>   50 KSP preconditioned resid norm 1.864914790828e+02 true resid norm
> 1.864914790828e+02 ||Ae||/||Ax|| 2.798875072987e+02
>   51 KSP preconditioned resid norm 6.741080961009e+01 true resid norm
> 6.759768469363e+01 ||Ae||/||Ax|| 1.666964983874e+02
> 51 KSP Residual norm 6.741080961009e+01
>   51 KSP preconditioned resid norm 6.741080961009e+01 true resid norm
> 6.759768469363e+01 ||Ae||/||Ax|| 1.666964983874e+02
>   52 KSP preconditioned resid norm 5.191621875736e+01 true resid norm
> 5.146342142561e+01 ||Ae||/||Ax|| 7.225409161988e+01
> 
> But I generally see that the true residual of GCR seems to converge to
> desired tolerance but for GMRES, the convergence stagnates with
> different options on my MG preconditioner. This is puzzling to me
> since I spent enough time making sure that the preconditioner was
> working correctly but I will look more into this now. Thanks for all
> the helpful comments guys ! I will post here if I find any other
> curious behavior.
> 
> Vijay
> 
> On Tue, Dec 21, 2010 at 2:30 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>> 
>>  Yes but look at the true residual norm it is huge and indicates the 
>> residual is not really getting small.
>> 
>>  Barry
>> 
>> On Dec 21, 2010, at 2:26 PM, Vijay S. Mahadevan wrote:
>> 
>>> Barry, I tried with the true_residual_norm option and it gives me the
>>> exact same convergence as the one I have shown before.
>>> 
>>> 45 KSP Residual norm 2.511364148934e-07
>>>   45 KSP preconditioned resid norm 2.511364148934e-07 true resid norm
>>> 1.865039278877e+02 ||Ae||/||Ax|| 2.699481989705e+02
>>>   46 KSP preconditioned resid norm 1.307034672896e-07 true resid norm
>>> 1.864478183180e+02 ||Ae||/||Ax|| 2.724877015479e+02
>>> 46 KSP Residual norm 1.307034672896e-07
>>>   46 KSP preconditioned resid norm 1.307034672896e-07 true resid norm
>>> 1.864478183180e+02 ||Ae||/||Ax|| 2.724877015479e+02
>>>   47 KSP preconditioned resid norm 7.105770015635e-08 true resid norm
>>> 1.864563163311e+02 ||Ae||/||Ax|| 2.722662760395e+02
>>> 47 KSP Residual norm 7.105770015635e-08
>>>   47 KSP preconditioned resid norm 7.105770015635e-08 true resid norm
>>> 1.864563163311e+02 ||Ae||/||Ax|| 2.722662760395e+02
>>>   48 KSP preconditioned resid norm 4.098578230710e-08 true resid norm
>>> 1.864560351328e+02 ||Ae||/||Ax|| 2.690284539995e+02
>>> 48 KSP Residual norm 4.098578230710e-08
>>>   48 KSP preconditioned resid norm 4.098578230710e-08 true resid norm
>>> 1.864560351328e+02 ||Ae||/||Ax|| 2.690284539995e+02
>>>   49 KSP preconditioned resid norm 2.426160176080e-08 true resid norm
>>> 1.864897210364e+02 ||Ae||/||Ax|| 2.696456942624e+02
>>> 49 KSP Residual norm 2.426160176080e-08
>>>   49 KSP preconditioned resid norm 2.426160176080e-08 true resid norm
>>> 1.864897210364e+02 ||Ae||/||Ax|| 2.696456942624e+02
>>>   50 KSP preconditioned resid norm 1.864914790828e+02 true resid norm
>>> 1.864914790828e+02 ||Ae||/||Ax|| 2.798875072987e+02
>>> 50 KSP Residual norm 1.864914790828e+02
>>>   50 KSP preconditioned resid norm 1.864914790828e+02 true resid norm
>>> 1.864914790828e+02 ||Ae||/||Ax|| 2.798875072987e+02
>>>   51 KSP preconditioned resid norm 6.741080961009e+01 true resid norm
>>> 6.759768469363e+01 ||Ae||/||Ax|| 1.666964983874e+02
>>> 51 KSP Residual norm 6.741080961009e+01
>>>   51 KSP preconditioned resid norm 6.741080961009e+01 true resid norm
>>> 6.759768469363e+01 ||Ae||/||Ax|| 1.666964983874e+02
>>>   52 KSP preconditioned resid norm 5.191621875736e+01 true resid norm
>>> 5.146342142561e+01 ||Ae||/||Ax|| 7.225409161988e+01
>>> 52 KSP Residual norm 5.191621875736e+01
>>>   52 KSP preconditioned resid norm 5.191621875736e+01 true resid norm
>>> 5.146342142561e+01 ||Ae||/||Ax|| 7.225409161988e+01
>>>   53 KSP preconditioned resid norm 4.513782866249e+01 true resid norm
>>> 4.546883708687e+01 ||Ae||/||Ax|| 7.426476446334e+01
>>> 53 KSP Residual norm 4.513782866249e+01
>>>   53 KSP preconditioned resid norm 4.513782866249e+01 true resid norm
>>> 4.546883708687e+01 ||Ae||/||Ax|| 7.426476446334e+01
>>>   54 KSP preconditioned resid norm 3.320195603375e+01 true resid norm
>>> 3.297361634749e+01 ||Ae||/||Ax|| 5.285029509147e+01
>>> 
>>> 
>>> Vijay
>>> 
>>> On Tue, Dec 21, 2010 at 2:23 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
>>>> 
>>>> On Dec 21, 2010, at 2:08 PM, Jed Brown wrote:
>>>> 
>>>>> On Tue, Dec 21, 2010 at 21:04, Barry Smith <bsmith at mcs.anl.gov> wrote:
>>>>> This is a sign that the preconditioner is seriously messed up and should 
>>>>> not be used in its current form.  It can happen if the matrix is nearly 
>>>>> singular and for example you use an incomplete factorization for a 
>>>>> preconditioner that just screws up the scaling like totally. Run with 
>>>>> -ksp_monitor_true_residual and you'll see that the solver is not really 
>>>>> solving the problem even though it thinks it is converging fine.
>>>>> 
>>>>> FGMRES only does right preconditioning so it should be showing the true 
>>>>> residual.
>>>> 
>>>>  No because it uses a recursive formula for "computing" the residual norm 
>>>> it does not compute it explicitly. So in extreme circumstances the 
>>>> recursively compute one generates "garbage".
>>>> 
>>>>   Barry
>>>> 
>>>> 
>>>> 
>> 
>> 

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