Hi Satish, On Wednesday 06 July 2011 10:40 AM, Satish Balay wrote: > what do you have for: > > > nm -Ao /opt/sgi/mpt/mpt-1.23/lib/* |grep -i mpi_sgi_status_ignore > > /opt/sgi/mpt/mpt-1.23/lib/libmpi_mt.so:00000000003865f0 B mpi_sgi_status_ignore /opt/sgi/mpt/mpt-1.23/lib/libmpi.so:00000000003835d0 B mpi_sgi_status_ignore
>> --CFLAGS=-Wno-deprecated >> -I/opt/sgi/mpt/mpt-1.23/include -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma -O3 >> -xT -g >> --with-mpi-lib=/opt/sgi/mpt/mpt-1.23/lib/libmpi.so >> > Perhaps you should use: > > CFLAGS="-Wno-deprecated -xT" COPTFLAGS="-O3 -g" > --with-mpi-lib="-L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma" > > Satish > > Unfortunately, I am still getting the same errors. I used nm to search for the rest of the missing symbols, all of them seem to be in libmpi.so, so i don't understand why the test is still giving these errors. Thanks once again, Pratik > On Wed, 6 Jul 2011, pratik wrote: > > >> Hi everyone, >> >> I am getting the following errors on testing PETSc on an SGI ALTIX cluster >> with sgi mpt-1.23.:(building and install was without any problems): >> >> /opt/intel/Compiler/11.1/038/bin/intel64/icc -o ex19.o -c -Wno-deprecated -g >> -I/home/pratikm/install/include -I/home/pratikm/install/include >> -I/usr/X11R6/include -I/usr/include -I/usr/lib64 >> -I/opt/sgi/mpt/mpt-1.23/include -D__INSDIR__=src/snes/examples/tutorials/ >> ex19.c >> /opt/intel/Compiler/11.1/038/bin/intel64/icc -Wno-deprecated -g -o ex19 >> ex19.o -Wl,-rpath,/home/pratikm/install/lib -L/home/pratikm/install/lib >> -lpetsc -L/usr/X11R6/lib64 -lX11 -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lhdf5 >> -llapack -lblas -Wl,-rpath,/opt/sgi/mpt/mpt-1.23/lib >> -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -ldl >> -L/opt/intel/Compiler/11.1/038/lib/intel64 >> -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/x86_64-suse-linux/lib -limf >> -lsvml -lipgo -ldecimal -lirc -lgcc_s -lirc_s -lgfortran -lm -lm -ldl -limf >> -lsvml -lipgo -ldecimal -lirc -lgcc_s -lirc_s -ldl >> /home/pratikm/install/lib/libpetsc.a(bvec2.o): In function >> `VecView_Seq_Binary': >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/impls/seq/bvec2.c:401: >> undefined reference to `mpi_sgi_status_ignore' >> /home/pratikm/install/lib/libpetsc.a(pdvec.o): In function >> `VecView_MPI_Binary': >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/impls/mpi/pdvec.c:459: >> undefined reference to `mpi_sgi_status_ignore' >> /home/pratikm/install/lib/libpetsc.a(gr2.o): In function `DAArrayMPIIO': >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/dm/da/src/gr2.c:478: undefined >> reference to `mpi_sgi_status_ignore' >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/dm/da/src/gr2.c:480: undefined >> reference to `mpi_sgi_status_ignore' >> /home/pratikm/install/lib/libpetsc.a(vecio.o): In function `VecLoad_Binary': >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/vec/vec/utils/vecio.c:275: >> undefined reference to `mpi_sgi_status_ignore' >> /home/pratikm/install/lib/libpetsc.a(mpiov.o): In function >> `MatGetSubMatrix_MPIAIJ_All': >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:585: >> undefined reference to `mpi_sgi_inplace' >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:646: >> undefined reference to `mpi_sgi_inplace' >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/aij/mpi/mpiov.c:720: >> undefined reference to `mpi_sgi_inplace' >> /home/pratikm/install/lib/libpetsc.a(mpibaij.o): In function >> `MatGetSeqNonzerostructure_MPIBAIJ': >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/baij/mpi/mpibaij.c:2391: >> undefined reference to `mpi_sgi_inplace' >> /home/pratikm/source/PETSc/petsc-3.1-p8/src/mat/impls/baij/mpi/mpibaij.c:2450: >> undefined reference to `mpi_sgi_inplace' >> make[3]: [ex19] Error 1 (ignored) >> /bin/rm -f ex19.o >> >> >> Can anyone please tell me what options i need to provide when configuring so >> that the program works correctly? >> here is the configure option that i used: >> >> ./config/configure.py --prefix=/home/pratikm/install >> -with-cc=/opt/intel/Compiler/11.1/038/bin/intel64/icc >> --CFLAGS=-Wno-deprecated >> -I/opt/sgi/mpt/mpt-1.23/include -L/opt/sgi/mpt/mpt-1.23/lib -lmpi -lsma -O3 >> -xT -g -with-cxx=/opt/intel/Compiler/11.1/038/bin/intel64/icpc >> --CXXFLAGS=-Wno-deprecated -I/opt/sgi/mpt/mpt-1.23/include >> -L/opt/sgi/mpt/mpt-1.23/lib -lmpi++ -lmpi -lsma >> --with-mpi-include=/opt/sgi/mpt/mpt-1.23/include >> --with-mpi-lib=/opt/sgi/mpt/mpt-1.23/lib/libmpi.so >> --with-hdf5-include=/usr/include --with-hdf5-lib=/usr/lib64/libhdf5.so >> >> >> Thanks in advance, >> Pratik >> >> >
