Hi, Please see the attachment. Yixun
On Wed, Nov 16, 2011 at 1:00 PM, <petsc-users-request at mcs.anl.gov> wrote: > Send petsc-users mailing list submissions to > petsc-users at mcs.anl.gov > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.mcs.anl.gov/mailman/listinfo/petsc-users > or, via email, send a message with subject or body 'help' to > petsc-users-request at mcs.anl.gov > > You can reach the person managing the list at > petsc-users-owner at mcs.anl.gov > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of petsc-users digest..." > > > Today's Topics: > > 1. Re: configuration error on Windows with VS2005 (Satish Balay) > 2. Re: ERROR Arguments are incompatible in MatSetValues() > (Matthew Knepley) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 16 Nov 2011 10:21:29 -0600 (CST) > From: Satish Balay <balay at mcs.anl.gov> > Subject: Re: [petsc-users] configuration error on Windows with VS2005 > To: PETSc users list <petsc-users at mcs.anl.gov> > Message-ID: <alpine.LFD.2.02.1111161019310.2218 at asterix> > Content-Type: TEXT/PLAIN; charset=US-ASCII > > Please send the corresponding configure.log to petsc-maint at mcs.anl.gov > > Satish > > On Wed, 16 Nov 2011, Yixun Liu wrote: > > > Hi, > > I have a configuration error as I install PETSc. > > > > According to the installation instructions, I first *Setup cygwin bash > > shell with Working Compilers:* > > > > C:\Program Files (x86)\Microsoft Visual Studio > 8\VC>c:\cygwin\bin\bash.exe > > --login > > > > I got the following message: > > > > Your group is currently "mkpasswd". This indicates that your > > gid is not in /etc/group and your uid is not in /etc/passwd. > > The /etc/passwd (and possibly /etc/group) files should be rebuilt. > > See the man pages for mkpasswd and mkgroup then, for example, run > > mkpasswd -l [-d] > /etc/passwd > > mkgroup -l [-d] > /etc/group > > Note that the -d switch is necessary for domain users. > > > > Then I run the commands: > > mkpasswd -l > /etc/passwd and > > mkpasswd -l > /etc/group > > > > at last, as I run command cl, I got message: > > > > Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 14.00.50727.762 > for > > 80x86 > > Copyright (C) Microsoft Corporation. All rights reserved. > > usage: cl [ option... ] filename... [ /link linkoption... ] > > > > So, I think it works now. > > > > Then I configure PETSc with the following command, but get the error "C > > compiler you provided with -with-cc=win32fe cl does not work". > > > > > > liuy14 at CC1DR1C515W05 /cygdrive/c/Yixun/VC/petsc-3.2-p5# ./configure > > --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win 32fe > cl' > > --download-f-blas-lapack=1 > > > > > =============================================================================== > > Configuring PETSc to compile on your system > > > =============================================================================== > > TESTING: configureExternalPackagesDir from > > config.framework(config/BuildSystem/c > > TESTING: configureDebuggers from > > PETSc.utilities.debuggers(config/PETSc/utilitie > > TESTING: configureCMake from > > PETSc.utilities.CMake(config/PETSc/utilities/CMake. > > TESTING: configureCLanguage from > > PETSc.utilities.languages(config/PETSc/utilitie > > TESTING: configureLanguageSupport from > > PETSc.utilities.languages(config/PETSc/ut > > TESTING: configureExternC from > > PETSc.utilities.languages(config/PETSc/utilities/ > > TESTING: configureFortranLanguage from > > PETSc.utilities.languages(config/PETSc/ut > > TESTING: configureMake from > > config.programs(config/BuildSystem/config/programs.p > > TESTING: configureMkdir from > > config.programs(config/BuildSystem/config/programs. > > TESTING: configurePrograms from > > config.programs(config/BuildSystem/config/progra > > TESTING: configureMercurial from > > config.sourceControl(config/BuildSystem/config/ > > TESTING: configureCVS from > > config.sourceControl(config/BuildSystem/config/source > > TESTING: configureSubversion from > > config.sourceControl(config/BuildSystem/config > > TESTING: configureDirectories from > > PETSc.utilities.petscdir(config/PETSc/utiliti > > TESTING: configureExternalPackagesDir from > > PETSc.utilities.petscdir(config/PETSc > > TESTING: configureInstallationMethod from > > PETSc.utilities.petscdir(config/PETSc/ > > TESTING: configureETags from > > PETSc.utilities.Etags(config/PETSc/utilities/Etags. > > TESTING: getDatafilespath from > > PETSc.utilities.dataFilesPath(config/PETSc/utilit > > TESTING: resetEnvCompilers from > > config.setCompilers(config/BuildSystem/config/se > > TESTING: checkMPICompilerOverride from > > config.setCompilers(config/BuildSystem/co > > TESTING: checkVendor from > > config.setCompilers(config/BuildSystem/config/setCompi > > TESTING: checkInitialFlags from > > config.setCompilers(config/BuildSystem/config/se > > TESTING: checkCCompiler from > > config.setCompilers(config/BuildSystem/config/setCo > > File > > "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers > > .py", line 508, in checkCCompiler > > self.checkCompiler('C') > > File > > "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers > > .py", line 410, in checkCompiler > > raise RuntimeError(msg) > > > ******************************************************************************* > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > > detail > > s): > > > ------------------------------------------------------------------------------- > > C compiler you provided with -with-cc=win32fe cl does not work > > > ******************************************************************************* > > > > > > Thank you for your help. > > > > Best, > > > > Yixun > > > > > > ------------------------------ > > Message: 2 > Date: Wed, 16 Nov 2011 11:33:13 -0600 > From: Matthew Knepley <petsc-maint at mcs.anl.gov> > Subject: Re: [petsc-users] ERROR Arguments are incompatible in > MatSetValues() > To: PETSc users list <petsc-users at mcs.anl.gov> > Message-ID: > <CAMYG4GmyUeoi8DVnu-p3gWdQgyeqdB45juT7mNJs_==Zk4Cf-Q at mail.gmail.com > > > Content-Type: text/plain; charset="iso-8859-1" > > On Wed, Nov 16, 2011 at 10:09 AM, PEREZ CERQUERA MANUEL RICARDO < > manuel.perezcerquera at polito.it> wrote: > > > Hi all, > > > > I have a petsc code which works for a certain number of unknowns, I mean > > it works with a matrix of 12000X 12000 elements, then when I increase the > > Number of unknowns to 25000 X 25000 I got this error at certain point in > > one of the MatSetValues() function, I don't know which are the possible > > causes, I have enough memory to handle it. Could you give me some ideas > of > > whats going on? . Thanks > > > > It appears that you are overflowing the integer offsets. I recommend trying > this either: > > a) With a 64-bit OS > > or if you cannot upgrade the machine > > b) Configuring with --with-64-bit-indices > > Thanks, > > Matt > > > > [0]PETSC ERROR: Fortran Pause - Enter command<CR> or <CR> to continue. > > --------------------- Error Message > ------------------------------**------ > > [0]PETSC ERROR: Arguments are incompatible! > > [0]PETSC ERROR: Memory regions overlap: either use PetscMemmov() > > or make sure your copy regions and lengths are correct. > > Length (bytes) 1217067760 first address -844745856 second > > address > > -1712377200! > > [0]PETSC ERROR: ------------------------------** > > ------------------------------**---- > > -------- > > [0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 5, Sat Oct 29 13:45:54 > > CDT 20 > > 11 > > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > > [0]PETSC ERROR: See docs/index.html for manual pages. > > [0]PETSC ERROR: ------------------------------** > > ------------------------------**---- > > -------- > > [0]PETSC ERROR: C:\Documents and Settings\d022117\Desktop\** > > MPIRunsPatrju\patreju1 > > .1.exe on a arch-mswi named GVSRV by d022117 Tue Nov 15 19:00:13 2011 > > [0]PETSC ERROR: Libraries linked from /home/d022117/petsc-3.2-p5/** > > arch-mswin-cxx- > > debug/lib > > [0]PETSC ERROR: Configure run at Mon Nov 7 13:06:56 2011 > > [0]PETSC ERROR: Configure options --with-cc="win32fe cl" > > --with-fc="win32fe ifor > > t" --with-cxx="win32fe cl" --download-f-blas-lapack=1 > > --with-scalar-type=complex > > --with-clanguage=cxx --useThreads=0 > > [0]PETSC ERROR: ------------------------------** > > ------------------------------**---- > > -------- > > [0]PETSC ERROR: PetscMemcpy() line 1779 in src/mat/impls/aij/seq/e:\** > > users\manuel > > \phd\cygwin\home\d022117\**petsc-3.2-p5\include\petscsys.**h > > [0]PETSC ERROR: MatSetValues_SeqAIJ() line 331 in > > src/mat/impls/aij/seq/E:\Users > > \Manuel\Phd\Cygwin\home\**d022117\PETSC-~2.2-P\src\mat\** > > impls\aij\seq\aij.c > > [0]PETSC ERROR: MatSetValues() line 1115 in src/mat/interface/E:\Users\** > > Manuel\Ph > > d\Cygwin\home\d022117\PETSC-~**2.2-P\src\mat\INTERF~1\matrix.**c > > > > job aborted: > > rank: node: exit code[: error message] > > 0: gvsrv.delen.polito.it: 1: process 0 exited without calling finalize > > > > Eng. Manuel Ricardo Perez Cerquera. MSc. Ph.D student > > Antenna and EMC Lab (LACE) > > Istituto Superiore Mario Boella (ISMB) > > Politecnico di Torino > > Via Pier Carlo Boggio 61, Torino 10138, Italy > > Email: manuel.perezcerquera at polito.it > > Phone: +39 0112276704 > > Fax: +39 011 2276 299 > > > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20111116/f98593ae/attachment-0001.htm > > > > ------------------------------ > > _______________________________________________ > petsc-users mailing list > petsc-users at mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/petsc-users > > > End of petsc-users Digest, Vol 35, Issue 52 > ******************************************* > -------------- next part -------------- An HTML attachment was scrubbed... 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