>>> /opt/petsc/petsc-3.2-p5/mpi_cScalar/include/petscconfiginfo.h(3): error: missing closing quote "; ^ <<< Can you send in this file as attachment?
>>>>>>>>> Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-petsc-arch=mpi_cScalar --with-mpi-dir=/opt/mpich2-current --with-scalar-type=complex --with-blas-lapack-dir=/opt/intel/lib/intel64 --download-umfpack=1 --with-exodusii-dir=/opt/exodusii-4.98 --with-netcdf-dir=/opt/netcdf_v4.1.1 --download-superlu_dist=1 --download-parmetis=1 --download-mumps=1 --download-scalapack=1 --download-blacs=1^M <<<<<<<< Not sure how the ^M char crept into the configure run - but perhaps its causing the petscconfiginfo.h file to be not created correctly. Satish On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > Hello, > Can you tell me what should be the config options to use the > scalapack and blacs provided in intel mkl with petsc ? > > thanks > Reddy > > On Wed, 7 Dec 2011, Alexander Grayver wrote: > Hi Reddy, > > You should use --with-scalapack-lib/include and --with-blacs-lib/include > > For instance: > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include > > Regards, > Alexander > > On 07.12.2011 13:26, Dharmendar Reddy wrote: > > Hello, > > Can you tell me what should be the config options to use the > > scalapack and blacs provided in intel mkl with petsc ? > > > > thanks > > Reddy > > > > -- > > ----------------------------------------------------- > > Dharmendar Reddy Palle > > Graduate Student > > Microelectronics Research center, > > University of Texas at Austin, > > 10100 Burnet Road, Bldg. 160 > > MER 2.608F, TX 78758-4445 > > e-mail: dharmareddy84 at gmail.com <mailto:dharmareddy84 at gmail.com> > > Phone: +1-512-350-9082 > > United States of America. > > > > On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > I sent this email to petsc-users, it bounced back. Can someone please > clarify the following query.. > > ---------- Forwarded message ---------- > From: Dharmendar Reddy <dharmareddy84 at gmail.com> > Date: Wed, Dec 7, 2011 at 7:42 AM > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ? > To: PETSc users list <petsc-users at mcs.anl.gov> > > > I tried --with-scalapack-dir=/opt/inte/mkl/ --with-blacs-dir=/opt/intel/mkl > and now with the method suggested by you > I am getting an error. I have attached the configure.log > > ******************************************************************************* > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > details): > ------------------------------------------------------------------------------- > --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a'] > and > --with-blacs-include=['/opt/intel/mkl/include'] did not work > ******************************************************************************* > > > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver > <agrayver at gfz-potsdam.de>wrote: > > > ** > > Hi Reddy, > > > > You should use --with-scalapack-lib/include and --with-blacs-lib/include > > > > For instance: > > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include > > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include > > > > Regards, > > Alexander > > > > > > On 07.12.2011 13:26, Dharmendar Reddy wrote: > > > > Hello, > > Can you tell me what should be the config options to use the > > scalapack and blacs provided in intel mkl with petsc ? > > > > thanks > > Reddy > > > > -- > > ----------------------------------------------------- > > Dharmendar Reddy Palle > > Graduate Student > > Microelectronics Research center, > > University of Texas at Austin, > > 10100 Burnet Road, Bldg. 160 > > MER 2.608F, TX 78758-4445 > > e-mail: dharmareddy84 at gmail.com > > Phone: +1-512-350-9082 > > United States of America. > > > > > > > > > On Wed, 7 Dec 2011, Satish Balay wrote: > > --with-mpi-dir=/opt/mpich2-current > > I guess thats incompatible with > /opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a > > > its easier just to use --download-blacs --download-scalapack. > > Satish > > > On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > > > I sent this email to petsc-users, it bounced back. Can someone please > > clarify the following query.. > > > > ---------- Forwarded message ---------- > > From: Dharmendar Reddy <dharmareddy84 at gmail.com> > > Date: Wed, Dec 7, 2011 at 7:42 AM > > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ? > > To: PETSc users list <petsc-users at mcs.anl.gov> > > > > > > I tried --with-scalapack-dir=/opt/inte/mkl/ --with-blacs-dir=/opt/intel/mkl > > and now with the method suggested by you > > I am getting an error. I have attached the configure.log > > > > ******************************************************************************* > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > > details): > > ------------------------------------------------------------------------------- > > --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a'] > > and > > --with-blacs-include=['/opt/intel/mkl/include'] did not work > > ******************************************************************************* > > > > > > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver > > <agrayver at gfz-potsdam.de>wrote: > > > > > ** > > > Hi Reddy, > > > > > > You should use --with-scalapack-lib/include and --with-blacs-lib/include > > > > > > For instance: > > > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a > > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include > > > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a > > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include > > > > > > Regards, > > > Alexander > > > > > > > > > On 07.12.2011 13:26, Dharmendar Reddy wrote: > > > > > > Hello, > > > Can you tell me what should be the config options to use the > > > scalapack and blacs provided in intel mkl with petsc ? > > > > > > thanks > > > Reddy > > > > > > -- > > > ----------------------------------------------------- > > > Dharmendar Reddy Palle > > > Graduate Student > > > Microelectronics Research center, > > > University of Texas at Austin, > > > 10100 Burnet Road, Bldg. 160 > > > MER 2.608F, TX 78758-4445 > > > e-mail: dharmareddy84 at gmail.com > > > Phone: +1-512-350-9082 > > > United States of America. > > > > > > > > > > > > > > > > > > On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > I was trying to install mumps and then i got messages that i need to > install scalapack and blacs. I will try the --download options.. > > On Wed, Dec 7, 2011 at 10:57 AM, Satish Balay <petsc-maint at > mcs.anl.gov>wrote: > > > > --with-mpi-dir=/opt/mpich2-current > > > > I guess thats incompatible with > > /opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a > > > > > > its easier just to use --download-blacs --download-scalapack. > > > > Satish > > > > > > On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > > > > > I sent this email to petsc-users, it bounced back. Can someone please > > > clarify the following query.. > > > > > > ---------- Forwarded message ---------- > > > From: Dharmendar Reddy <dharmareddy84 at gmail.com> > > > Date: Wed, Dec 7, 2011 at 7:42 AM > > > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ? > > > To: PETSc users list <petsc-users at mcs.anl.gov> > > > > > > > > > I tried --with-scalapack-dir=/opt/inte/mkl/ > > --with-blacs-dir=/opt/intel/mkl > > > and now with the method suggested by you > > > I am getting an error. I have attached the configure.log > > > > > > > > ******************************************************************************* > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for > > > details): > > > > > ------------------------------------------------------------------------------- > > > > > --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a'] > > > and > > > --with-blacs-include=['/opt/intel/mkl/include'] did not work > > > > > ******************************************************************************* > > > > > > > > > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver > > > <agrayver at gfz-potsdam.de>wrote: > > > > > > > ** > > > > Hi Reddy, > > > > > > > > You should use --with-scalapack-lib/include and > > --with-blacs-lib/include > > > > > > > > For instance: > > > > > > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a > > > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include > > > > > > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a > > > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include > > > > > > > > Regards, > > > > Alexander > > > > > > > > > > > > On 07.12.2011 13:26, Dharmendar Reddy wrote: > > > > > > > > Hello, > > > > Can you tell me what should be the config options to use the > > > > scalapack and blacs provided in intel mkl with petsc ? > > > > > > > > thanks > > > > Reddy > > > > > > > > -- > > > > ----------------------------------------------------- > > > > Dharmendar Reddy Palle > > > > Graduate Student > > > > Microelectronics Research center, > > > > University of Texas at Austin, > > > > 10100 Burnet Road, Bldg. 160 > > > > MER 2.608F, TX 78758-4445 > > > > e-mail: dharmareddy84 at gmail.com > > > > Phone: +1-512-350-9082 > > > > United States of America. > > > > > > > > > > > > > > > > > > > > > > > > > > > > On Wed, 7 Dec 2011, Satish Balay wrote: > blacs is dependent on mpi - so if using libmkl_blacs_openmpi_lp64.a - > make sure you use the right version of openmpi - thats compatible with > it. [if not - choose the appropriate variant of blacs for your mpi] > > BTW: PETSc does not use blas/scalapack - its primarily needed by mumps. > > Satish > > On Wed, 7 Dec 2011, Alexander Grayver wrote: > > > Hi Reddy, > > > > You should use --with-scalapack-lib/include and --with-blacs-lib/include > > > > For instance: > > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include > > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include > > > > Regards, > > Alexander > > > > On 07.12.2011 13:26, Dharmendar Reddy wrote: > > > Hello, > > > Can you tell me what should be the config options to use the > > > scalapack and blacs provided in intel mkl with petsc ? > > > > > > thanks > > > Reddy > > > > > > -- > > > ----------------------------------------------------- > > > Dharmendar Reddy Palle > > > Graduate Student > > > Microelectronics Research center, > > > University of Texas at Austin, > > > 10100 Burnet Road, Bldg. 160 > > > MER 2.608F, TX 78758-4445 > > > e-mail: dharmareddy84 at gmail.com <mailto:dharmareddy84 at gmail.com> > > > Phone: +1-512-350-9082 > > > United States of America. > > > > > > > > > On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > I could configure with download options but now i get make error. Can you > help me with this.. > > > On Wed, Dec 7, 2011 at 11:06 AM, Dharmendar Reddy > <dharmareddy84 at gmail.com>wrote: > > > I was trying to install mumps and then i got messages that i need to > > install scalapack and blacs. I will try the --download options.. > > > > > > On Wed, Dec 7, 2011 at 10:57 AM, Satish Balay <petsc-maint at > > mcs.anl.gov>wrote: > > > >> > --with-mpi-dir=/opt/mpich2-current > >> > >> I guess thats incompatible with > >> /opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a > >> > >> > >> its easier just to use --download-blacs --download-scalapack. > >> > >> Satish > >> > >> > >> On Wed, 7 Dec 2011, Dharmendar Reddy wrote: > >> > >> > I sent this email to petsc-users, it bounced back. Can someone please > >> > clarify the following query.. > >> > > >> > ---------- Forwarded message ---------- > >> > From: Dharmendar Reddy <dharmareddy84 at gmail.com> > >> > Date: Wed, Dec 7, 2011 at 7:42 AM > >> > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ? > >> > To: PETSc users list <petsc-users at mcs.anl.gov> > >> > > >> > > >> > I tried --with-scalapack-dir=/opt/inte/mkl/ > >> --with-blacs-dir=/opt/intel/mkl > >> > and now with the method suggested by you > >> > I am getting an error. I have attached the configure.log > >> > > >> > > >> ******************************************************************************* > >> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log > >> for > >> > details): > >> > > >> ------------------------------------------------------------------------------- > >> > > >> --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a'] > >> > and > >> > --with-blacs-include=['/opt/intel/mkl/include'] did not work > >> > > >> ******************************************************************************* > >> > > >> > > >> > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver > >> > <agrayver at gfz-potsdam.de>wrote: > >> > > >> > > ** > >> > > Hi Reddy, > >> > > > >> > > You should use --with-scalapack-lib/include and > >> --with-blacs-lib/include > >> > > > >> > > For instance: > >> > > > >> --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a > >> > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include > >> > > > >> --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a > >> > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include > >> > > > >> > > Regards, > >> > > Alexander > >> > > > >> > > > >> > > On 07.12.2011 13:26, Dharmendar Reddy wrote: > >> > > > >> > > Hello, > >> > > Can you tell me what should be the config options to use the > >> > > scalapack and blacs provided in intel mkl with petsc ? > >> > > > >> > > thanks > >> > > Reddy > >> > > > >> > > -- > >> > > ----------------------------------------------------- > >> > > Dharmendar Reddy Palle > >> > > Graduate Student > >> > > Microelectronics Research center, > >> > > University of Texas at Austin, > >> > > 10100 Burnet Road, Bldg. 160 > >> > > MER 2.608F, TX 78758-4445 > >> > > e-mail: dharmareddy84 at gmail.com > >> > > Phone: +1-512-350-9082 > >> > > United States of America. > >> > > > >> > > > >> > > > >> > > >> > > >> > > >> > >> > > > > > > -- > > ----------------------------------------------------- > > Dharmendar Reddy Palle > > Graduate Student > > Microelectronics Research center, > > University of Texas at Austin, > > 10100 Burnet Road, Bldg. 160 > > MER 2.608F, TX 78758-4445 > > e-mail: dharmareddy84 at gmail.com > > Phone: +1-512-350-9082 > > United States of America. > > > > > > >
